Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 4e-14 >seq1 Length=75119905 Score = 95.1 bits (104), Expect = 4e-14 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| || ||||| || || ||||| || | || || ||| || Sbjct 54133082 GCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 54133023 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || ||||||||||| | || |||||||| || |||| || || ||||| ||| Sbjct 54133022 TCTGCG-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 54132964 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| |||| |||||||||||||| || |||||| Sbjct 54132963 GAGCTCATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTCCTCTAC 54132910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335430184460