Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 >seq1 Length=75119905 Score = 127 bits (140), Expect = 3e-24 Identities = 306/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | || ||| ||||| Sbjct 54132635 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 54132694 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCA-ACTTGTTTGAGGAGAC 122488 |||| || || || ||||| | || | |||||||| | || ||| || | Sbjct 54132695 CAGTCGAACGGGTTGACGGCGTTGTACATCTTGCTGCACCCCAGAGCCGT--GAGCAGGC 54132752 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | || |||| ||||||| | ||| | | |||||| |||| |||| || Sbjct 54132753 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGCAC 54132812 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 |||| || ||||| |||||||| | |||| || ||||| || || ||||| || Sbjct 54132813 ATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTCGC 54132872 Query 122609 GGATAGTTTCGGTAGTGGGTCTA--TTAC----GCAAAGTCTTGAAGAGCTCCACGGCAA 122662 ||| ||| | | || | || | | ||| | | |||| ||| | Sbjct 54132873 GGACG----CGGGACTCC-TCGAGCTTGCCGTTGAGGAGT-TCGTAGAGGAGGCAGGCGA 54132926 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| || ||||| || || || || || || || |||||| || || |||| Sbjct 54132927 AGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCA 54132986 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | || |||||||| || || ||||||||||| |||| Sbjct 54132987 TGAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 54133046 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 | || || || || || | ||||| ||||||||| Sbjct 54133047 CGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 54133081 Score = 122 bits (134), Expect = 1e-22 Identities = 257/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| ||||| | || ||||| || || || ||||||||||| | | Sbjct 25424784 AAGCCATCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCATTCCCCC-C 25424726 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| || ||| | || || || || |||||||| |||||||| || | Sbjct 25424725 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCGATCTCATCGATGAAGACGATGC 25424667 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || || || || | ||||| || ||||| || | Sbjct 25424666 ACGGCGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTCACCCTGGACGCGCCCACGCCCA 25424607 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | |||| ||| || || | | || | ||| || ||| || || | ||| || | Sbjct 25424606 CGAACAGCTCGACGAACTCGGACGCCGCGCAGGAGAAGAACGGCACGCCGGCTTCCCCGG 25424547 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| |||||||| || ||||| |||||||| ||| || | || ||| ||| Sbjct 25424546 CGACGGCACGGGCGAGCAGCGTCTTCCCCGTACCCGGCGGGCCGACAAGCAGGCAGCCCT 25424487 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||||||||||| ||| | ||| | || || | |||||| |||||||| | || Sbjct 25424486 TGGGGATCTTGGCCCCAAGCGCGGTGTATTTGTCAGGGTTCTTGAGGAAATCCACGACCT 25424427 Query 11898 CTTCAAGTTCATCTTTGGCC 11917 | | || ||| |||||| Sbjct 25424426 CCTGTAGCTCAAGCTTGGCC 25424407 Score = 114 bits (126), Expect = 2e-20 Identities = 198/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | ||| | || || | ||| || | | || ||||| ||| Sbjct 27734242 TCAAAACGTCCAGGTCTAAGTAAAGCAGAGTCCAAGATGTCAGCCCTGTTGGTGGCAGCA 27734301 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | || ||||| | | ||||| ||||||||||| || | || ||||| | | Sbjct 27734302 ACAACAATTATTCCAGTGTTACCCTCAAACCCATCCATCTCAGTCAATAGCTGATTGAGT 27734361 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 ||||| || || |||||||| | ||||||| || || | |||| | || Sbjct 27734362 GTTTGCTCCCTTTCATCATTCCC------ACCACCAATACCTGTTCCTCTTTGCCTTCCA 27734415 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | || Sbjct 27734416 ACAGCATCAATTTCATCAACAAATACTATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAA 27734475 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| ||||||||||||||||||||||| Sbjct 27734476 AGATCACGAACCCGGGAGGCACCAACACCAACAAACATCTCCACAAA 27734522 Score = 114 bits (126), Expect = 2e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || ||||||||||| |||||||| | || ||| ||||| || || Sbjct 47003991 CTGGGGCCTTGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTGAACCAACGCTG 47003932 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||||| | |||||| | | |||| |||||||| ||| ||| || || | || Sbjct 47003931 GGACATCAGATGGTATGTTCTGATGGCAGAGTCAATGTCATCCTTGTGTATCCCTACTGA 47003872 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 || | ||| ||||||| |||||| |||| | || || ||| | ||| || |||| Sbjct 47003871 TACTCTCATTAACATGTGCTGTGGTCTTTCAACGACAATCCCACCAAGC--TTCAAGAGG 47003814 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | |||| || || |||| ||| ||||| || ||||| |||||| Sbjct 47003813 TAAGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 47003765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031780188800