Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 172 7e-38 >seq1 Length=75119905 Score = 172 bits (190), Expect = 7e-38 Identities = 317/455 (70%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 54132635 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 54132694 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT--TGCTGGCACTCCA-ATCTGTTTGAGGAGA 129844 | || || ||||| | ||| | || ||||| ||| ||| | | || ||| || Sbjct 54132695 CAGTCGAACGGGTTGACGGCGTTGTACATCTTGCTG-CACCCCAGAGCCGT--GAGCAGG 54132751 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || || | |||| |||| ||||||| ||| ||| |||||| |||| |||| | Sbjct 54132752 CGGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGCA 54132811 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 ||||| || ||||| |||||||| || |||| ||||| || || || ||||| || Sbjct 54132812 CATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTCG 54132871 Query 129965 TGAATG---GTCTCCGTGCCAGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAA 130019 | | | | |||| | || | | ||| | | | || ||| || ||| | Sbjct 54132872 CGGACGCGGGACTCCTCG--AGCTTGCCGTTGAGGAGTTCGTAGAGGAGG--CA-GGCGA 54132926 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| || |||||||| || || |||||| || || |||| Sbjct 54132927 AGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCA 54132986 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||||||| |||||||| | |||||| || || || || ||||| ||||||||||| |||| Sbjct 54132987 TGAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 54133046 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || ||||| || | ||| ||||| || ||| Sbjct 54133047 CGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 54133081 Score = 165 bits (182), Expect = 1e-35 Identities = 316/453 (70%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| |||||||||||||| || ||||| || | || | ||| |||||| Sbjct 42406479 TAGTCTCCAACACGCTTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCATC 42406420 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| | | ||| | || | || ||| ||| | |||| || || Sbjct 42406419 CAGTCGAATGGGTTTGTGGCGTTGTACATCTTCTTGCAGCCCAG-CGCCATGAGCAGGCG 42406361 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| |||| |||| ||||||| ||| ||| |||||| || | ||| || Sbjct 42406360 GTCCGCGACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGAGCGCA 42406301 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| ||| ||| || |||| ||||| || || || | ||||| | | Sbjct 42406300 AGGGAGCGCGTCGCAGACAAACTCCCTCTCGATGTCAACGGCGTCGCCGACGATCTCACG 42406241 Query 129967 AATG-GTCTC-CGTGCCAGGTCTATTGCGCA--AAGTC-TTGAAGAGTTCCACGGCAAAC 130021 | | || | ||| |||| | | | || | | ||| | || ||| || |||||| Sbjct 42406240 GACGCGTGACTCGT-CCAGCT-TGCTCCGGAGGATGTCGTAGAGGAG--GCA-GGCAAAG 42406186 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || || ||||| |||||||| || || || ||||| || || |||||| Sbjct 42406185 TCGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATG 42406126 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || || || || ||||| |||||||| |||||||| Sbjct 42406125 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATCCCCTCG 42406066 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| |||||| Sbjct 42406065 ACGCAGGCGAAGGCGACCAGGCGCTCGGCAAAG 42406033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||||||||| || ||||||| ||||| || | |||||||||| || Sbjct 27734326 TCAAACCCATCCATCTCAGTCAATAGCTGATTGAGTGTTTGCTCCCTTTCATCATTCCCA 27734385 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | | | |||| | || || || ||||||||||| | || || || Sbjct 27734386 CCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATG 27734445 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || ||| | | || | ||| ||| | ||| || || | |||||| ||||| Sbjct 27734446 CAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACACC 27734504 Query 14329 CACAAACATCTCCACAAA 14346 ||||||||||||||||| Sbjct 27734505 AACAAACATCTCCACAAA 27734522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434983547680