Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=75119905 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 54133081 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 54133022 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| ||||||||||| || ||| |||||||||||| Sbjct 54133021 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGA 54132962 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 54132961 GCTCATCTCGCGCGACGAGGGGCTGCAC 54132934 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| || |||| || || || || ||||| || |||||||| || ||||| Sbjct 42406033 CTTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCGGGCTCCTT 42406092 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || || ||||||||||| Sbjct 42406093 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTAACTTTCTCCAACGA 42406152 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| || ||||| || || ||| || ||||| Sbjct 42406153 GCTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGC 42406191 Score = 118 bits (130), Expect = 1e-21 Identities = 305/454 (67%), Gaps = 22/454 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | || || || || ||||| ||| || | |||| | || |||||| Sbjct 25424874 CGATCAAACCTCCCCGGCCGCAGAAGCGCCGAATCCAGCACATCAGGCCTGTTGGTCGCG 25424815 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || ||||||||||| || | || |||| Sbjct 25424814 GCGAGCACTATGACACCGCTGTTTCCGGAG--AAGCCATCCATCTCCGTGAGCAGCTGGT 25424757 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||||||| | || ||| || |||| || ||| | || Sbjct 25424756 TAATGGTCTGCTCCCTCTCATCATTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 25424699 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| || |||||||| |||||||||||||| || ||| || || | | Sbjct 25424698 GACGGCGTCGATCTCATCGATGAAGACGATGCACGGCGCCTTGGCCTTGGCCTTC----T 25424643 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || || |||| ||| || | |||||||| || || |||| ||| || || | | Sbjct 25424642 CGAACAGGTCCC--TCACCCTGGACGCGCCCACGCCCACGAACAGCTCGACGAACTCGGA 25424585 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 || | || || ||| || || | ||| || || | ||| |||||||| || || Sbjct 25424584 CGCCGCGCAGGAGAAGAACGGCACGCCGGCTTCCCCGGCGACGGCACGGGCGAGCAGCGT 25424525 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCCACTTC 9932 ||| |||||||| ||| || | || | |||| | | | || |||||||| ||| Sbjct 25424524 CTTCCCCGTACCCGGCGGGCCGACAAGCA-GGCAGCCCTTGGGGATCTTGGCCCCAAGCG 25424466 Query 9933 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | |||| | ||||| | ||| || |||||||| Sbjct 25424465 CGGTGTATTTGTCAGGGTTCTTGAGGAAATCCAC 25424432 Score = 105 bits (116), Expect = 8e-18 Identities = 148/204 (73%), Gaps = 14/204 (7%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||| ||||||||||| ||||| || || || | ||||| |||| |||||||||| | Sbjct 27734326 TCAAACCCATCCATCTCAGTCAATAGCTGATTGAGTGTTTGCTCCCTTTCATCATTCCC- 27734384 Query 9671 GGCATACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||||||| | ||| | |||| |||| || |||||||| ||||||| || Sbjct 27734385 -----ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAT 27734439 Query 9725 ACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 9783 || ||||| || ||| | | | | ||| ||| ||||| || || || ||| || Sbjct 27734440 ACTATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACC 27734498 Query 9784 CACACCAACAAACATCTCCACAAA 9807 ||||||||||||||||||||||| Sbjct 27734499 AACACCAACAAACATCTCCACAAA 27734522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| |||||| ||||||| ||| | || | | || || || ||| |||||||| Sbjct 47003842 GAAAGACCACAGCACATGTTAATGAGAGTATCAGTAGGGATACACAAGGATGACATTGAC 47003901 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 104335 |||| | | |||||| | ||||||||| || ||||| ||| || | |||||| Sbjct 47003902 TCTGCCATCAGAACATACCATCTGATGTCCCAGCGTTGGTTCACTCATGCTTCGCCAACC 47003961 Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||||||||||| || ||||| ||||| Sbjct 47003962 CTTTTCAATGCTGGCACCCCAAGGCCCCA 47003990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260595858720