Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 >seq1 Length=75119905 Score = 201 bits (222), Expect = 1e-46 Identities = 580/875 (66%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 54133494 TTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 54133435 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | ||||||| | |||||| || ||| | | |||||| || ||| | Sbjct 54133434 ACGGCCGAGGAGGTGGACCTCTCCTCGGACGCGCGCCACTGGGACGAGACGCTCTCCCCC 54133375 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 54133374 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 54133315 Query 59739 ATGGAAAATATAGACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | ||| || || ||| | ||||||||||| | Sbjct 54133314 CTCGAGAACCTCGCCTCCCGGTTCATGTCC---GACGTGCAGGTGGCCGAGGCCCGCGCC 54133258 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| |||||| || || | Sbjct 54133257 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCCCTGCTGCT 54133199 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | | ||||||| | || ||||| ||| | || || Sbjct 54133198 CGAGACCTACATCCGCGACGCCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGT 54133139 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATG--AGTCCTGGAGCATCA 59972 |||||| || | || || | ||| |||||| ||||| || | |||| Sbjct 54133138 CCCCGCCGTCCGCCGCAAGGCCGTCTGGTCCATGCGCTGGATCGAAGGCGGCGAGCGC-- 54133081 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 54133080 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 54133021 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| |||||||| ||||||||||| || | |||||||||||| Sbjct 54133020 TGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAG 54132961 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || || || |||||||| || || || || || || | ||||| || ||| Sbjct 54132960 CTCATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGC-CTGCCTCCTCTACGAACTCCT 54132902 Query 60152 -ATTGGAAAAAT---GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || | | | || | | | | |||| || | | | | | ||| Sbjct 54132901 CAACGGCAAGCTCGAGGAGTCCCGCG----TCCGCGAGATCGTCGCCGACGCCGT-TGAC 54132847 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| ||||||||| || || || ||||| ||| | || ||| |||| ||| Sbjct 54132846 ATCGAGAGGGAGTTCATCTGCGACGCTCTGCCATGTGCCCTCGTCGGCATGAACGCCGGA 54132787 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 ||| |||||||| |||| ||||| |||||| |||| ||| | | || | | Sbjct 54132786 CTCATGGGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCACGGCTC--TGGGGTGCA 54132729 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | | || ||| || ||||| ||||||||||||||| ||||||| || | || Sbjct 54132728 GCA-AGATGTACAACGCCGTCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 54132670 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 54132669 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 54132635 Score = 192 bits (212), Expect = 6e-44 Identities = 451/662 (68%), Gaps = 24/662 (4%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| | ||||||||||| | ||||||| | ||| ||| || |||| || Sbjct 42405830 GACGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 42405888 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| |||||| || | ||||| | | || ||| | ||||||| Sbjct 42405889 CCACTCTGAGATGTACTCCCTGCTTATCGAGACCTACATCCGGGAGGACGTCGAGAAGGA 42405948 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 |||| ||||| ||| | || || |||||| || | || || ||||||||||| Sbjct 42405949 CCGTCTTTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAATGGGCCAT 42406008 Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | |||| ||||| | || || | || || || ||||| Sbjct 42406009 GCGCTGGATCGACGGCGGCGAGCGC--TTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTC 42406066 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || || |||||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 42406067 GAGGGGATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 42406126 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||||||||| | ||||||||||||||| || ||||| ||||| ||||| || || Sbjct 42406127 ATGCCGGGCCTAACTTTCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGCGAC 42406186 Query 60126 TTTGCAGTGAC-GCTCTATTCACA-CCTATTG-GAAAAATGCCCTTCCAAGGATATTCAC 60182 ||||| || | ||||| ||| ||| | | || || | | | | | Sbjct 42406187 TTTGC-CTGCCTCCTCTA-CGACATCCTCCGGAGCAAGCTGGACGAGTCACG-CGTCCGT 42406243 Query 60183 AAGATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| | || | | || ||| | ||||| ||||| || || ||||| || || Sbjct 42406244 GAGATCG-TCGGCGACGCCGTTGACATCGAGAGGGAGTTTGTCTGCGACGCGCTCCCTTG 42406302 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | ||| | || ||| ||| | |||| |||||||| |||| ||||||||||| Sbjct 42406303 CGCTCTCGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTCGCGGACCG 42406362 Query 60302 C---CTCATGGCCC--AGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGAC 60356 | |||||||| | | | ||||| || ||| || | ||||| |||||| Sbjct 42406363 CCTGCTCATGGCGCTGGGCTGCAAGAAG-----ATGTACAACGCCACAAACCCATTCGAC 42406417 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 ||||||||| ||||| || | || |||||||| ||||| |||||||| || || || Sbjct 42406418 TGGATGGAGCTGATCTCCCTGCAGGGAAAGACCAATTTCTTCGAGAAGCGTGTTGGAGAC 42406477 Query 60417 TA 60418 || Sbjct 42406478 TA 42406479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524608016320