Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 152 6e-32 seq2 98.7 1e-15 seq4 89.7 6e-13 seq3 89.7 6e-13 seq5 86.0 7e-12 >seq1 Length=75119905 Score = 152 bits (168), Expect = 6e-32 Identities = 551/845 (65%), Gaps = 33/845 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | || ||||||| ||||||| Sbjct 54132635 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 54132694 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAG-GCTTCTCCCCAAA-CTGTGCCATGAGGC 74580 |||||||| ||||| || ||| || ||| | ||||| | | ||| | |||| Sbjct 54132695 CAGTCGAACGGGTTGACGGCGTTGTACATCTTGCTGCACCCCAGAGCCGTG--AGCAGGC 54132752 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || || || || | |||||||| ||| ||| || | |||||||| ||| | Sbjct 54132753 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGCAC 54132812 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGG--ACAATCTT 74698 | ||||| || ||| ||| ||||| ||||| | || || | | || || |||| Sbjct 54132813 ATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTC--AACGGCGTCGGCGACGATCTC 54132870 Query 74699 GTGAATG------TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751 | | | | || | | || ||| | | ||| | ||| || | || || Sbjct 54132871 GCGGACGCGGGACTCCTCG--AG----CTTGCCGTTGAGGAGTTCGTAGAGGAGGCA-GG 54132923 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 | || || ||| || || || | || | || || || || | || || | Sbjct 54132924 CGAAGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCG 54132983 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || ||||||||||| | ||| |||||||| |||||||| || ||||||||||| Sbjct 54132984 GCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGC 54133043 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCC 74928 | ||||| || || |||||||| ||||| | ||||| | || ||| | || |||| Sbjct 54133044 CCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCTTCGATCC 54133100 Query 74929 AAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGA 74988 | | | ||| | || || || ||| || ||||| || |||| || |||||| Sbjct 54133101 AGCGCATGGACCAGACGGCCTTGCGGCGGACGGCGGGGACGGTGTCGACGGCGCGGAAGA 54133160 Query 74989 GGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 ||| ||||||| ||| || || | | || | || || |||||| |||||| Sbjct 54133161 GGCGGTCCTTCTCGGCGGCGTCGCGGATGTAGGTCTCGAGCAGCAGGGAGTACATCTCCG 54133220 Query 75049 AATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 | || || |||| || ||| |||| | ||||||| | || ||||| || | ||| Sbjct 54133221 AGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCCACCTGC 54133279 Query 75108 ACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 || || || | ||| ||||| | ||||||||||| ||||||||||| Sbjct 54133280 ACGTCGGACATGAACCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAG 54133339 Query 75168 AAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAATCC 75224 || || || || ||| ||||||||||| ||| | ||| | |||||| | Sbjct 54133340 AAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGTCTCGTCCCAGTGG 54133399 Query 75225 TTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTG 75284 | |||| | | || | ||||||| |||||||||| | | | |||||| ||| Sbjct 54133400 CGCGCGTCCGAGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCTTG 54133459 Query 75285 TACAA 75289 || || Sbjct 54133460 TAGAA 54133464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 67890198 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 67890257 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 67890258 CTGAGCTATGAAAGC 67890272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4989382 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4989323 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4989322 TGAGCTATGAAAGC 4989309 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 9628234 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9628175 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 9628174 TGAGCTATGAAAGC 9628161 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 79629 TTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTGAG 79687 |||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| |||| Sbjct 56952930 TTCG-TGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAG 56952872 Query 79688 CTACGAAAGCA 79698 ||||||||||| Sbjct 56952871 CTACGAAAGCA 56952861 >seq2 Length=59384932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 50715727 ACTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 50715668 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 50715667 ACTGAGCTACGAAAGC 50715652 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 35198720 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 35198661 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 35198660 TGAGCTACGAGAGC 35198647 >seq4 Length=48772488 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 45838880 ACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 45838821 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 45838820 ACTGAGCTATGAAAGC 45838805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 441401 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 441342 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 441341 CTGAGCTATGAAAGC 441327 >seq3 Length=59935730 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 51094712 ACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 51094771 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 51094772 ACTGAGCTATGAAAGC 51094787 >seq5 Length=28563423 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 18355573 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18355514 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 18355513 TGAGCTATGAAAGC 18355500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215808474400