Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq1 105 4e-18 seq2 93.3 3e-14 >seq3 Length=59935730 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || | ||| |||||| ||||||||| ||||| ||||||| Sbjct 53306928 CCACCACGAAGGCGCAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCTGCT 53306987 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | || || || || || |||||||| || | | ||| || ||||| || Sbjct 53306988 AAGGTACGCCCATCCTCCAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGA 53307047 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || ||| || ||| ||||| ||||||||| Sbjct 53307048 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 53307106 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || || || || ||||| || ||||| Sbjct 53307107 CTCAAGCGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATTTGCAT 53307154 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | ||||| ||||| ||| |||||| || ||||| || || | | Sbjct 2681470 CCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2681529 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | ||||| |||||||| || Sbjct 2681530 AGGGTGCGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 2681589 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| |||||| Sbjct 2681590 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTGTCAATGGTGTCAGATGACTCCAC 2681648 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || || || |||||||| |||||||| Sbjct 2681649 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2681696 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| ||| |||||| || ||||| || || | || || || Sbjct 3233917 AGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGG 3233976 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| |||||||| || | |||||| Sbjct 3233977 CCATCCTCCAGCTGCTTCCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 3234036 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| |||||| || |||| ||| Sbjct 3234037 TTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAGGT 3234095 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || || ||||| ||||||||| Sbjct 3234096 GATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 3234135 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||||| ||| |||||| || ||||| || || | Sbjct 3234135 GCCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3234194 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || ||||| || | |||||| |||||||| || Sbjct 3234195 GAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGACGCTGCTGGTCCGGGGG 3234254 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||||| | Sbjct 3234255 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGA 3234313 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || ||||| | || || ||||| ||||||||| Sbjct 3234314 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 3234363 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | || || ||| |||||| || ||||| || || | ||| || || Sbjct 2681707 AGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGA 2681766 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| |||||||| || | |||||| Sbjct 2681767 CCATCCTCCAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 2681826 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||||||||| |||| ||| Sbjct 2681827 TTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAGGGT 2681885 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 2681886 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2681924 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||||| ||| |||||| || ||||| || || | Sbjct 3234363 GCCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3234422 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || || || || | |||||| |||||||| || Sbjct 3234423 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 3234482 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||||| | Sbjct 3234483 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAA 3234541 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || ||||| | || || ||||| |||||||| Sbjct 3234542 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3234590 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | || || ||| |||||| || ||||| || || | ||| || || Sbjct 3234601 AGACGCAGCACTAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGA 3234660 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || |||||||| |||||||| || | |||||| Sbjct 3234661 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCCGGGGGGATGCCCTCC 3234720 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| |||||| ||| || || | ||| Sbjct 3234721 TTGTCCTGGATC-TTGGCCTTGACATTGTCAATGGTGTCTGACGACTCAACCTCAAGGGT 3234779 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 3234780 GATGGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATG 3234819 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || ||||| ||||| | || || ||| |||| ||||| || Sbjct 13693469 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGCCCGTCCTCAAGCTGC 13693410 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | ||||| ||||| || || | |||||||||||| ||| || Sbjct 13693409 TTCCCAGCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT-TGAATCTT 13693351 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | |||||||| ||| || |||| || || || ||||| || Sbjct 13693350 CGCCTTGACGTTGTCGATTGTGTCCGAAGACTCAACCTCCAAAGTGATGGTCTTACCAGT 13693291 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | ||| || ||||| ||||||||| Sbjct 13693290 AAGCGTCTTGACAAAGATCTGCATG 13693266 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG- 34537 ||| |||| ||||| | || | || || ||| ||| |||||||||||||| |||| Sbjct 13693038 GCCACCTCGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTTTGAATGTTATAGTCTGC 13692979 Query 34538 -AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || |||| || | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 13692978 TAAGGTGT--GCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGG 13692921 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655 || | |||||||||||| ||| |||| || || || || ||||| || Sbjct 13692920 GGGATGCCCTCCTTGTCT-TGAATCTTTGCCTTGACATTATCTATCGTGTCAGAAGATTC 13692862 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || || || || || || | || |||||||||||||||||| Sbjct 13692861 AACCTCCAAAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATG 13692810 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | || | ||||| ||| |||||| || | ||| || || | Sbjct 31827564 CGCCGCCGCGGAGCCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCGG 31827623 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || ||| |||| || || || || ||||| || || | ||||| || ||||||| Sbjct 31827624 CCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGCTCCGGCG 31827683 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CT 34654 | || ||||||||||| || | || | || ||| | || ||||| || | || Sbjct 31827684 GGACCCCCTCCTTGTC-CTGCACCTTGGCCTTCACGTTCTCGATCGTGTC--CGATGACT 31827740 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||| || ||||| || || || | ||| ||||| || |||||||| Sbjct 31827741 CCACCTCCAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 31827792 >seq1 Length=75119905 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| |||||| ||||| || || || ||||||| ||| || || Sbjct 28210296 AGACGAAGCACCAGATGCAGAGTGGATTCCTTCTGGATATTGTAATCTGCAAGGGTGCGA 28210237 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || | ||||| |||||||| || | |||||| Sbjct 28210236 CCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 28210177 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||||||||| ||| || |||| ||| Sbjct 28210176 TTGTCCTGGATC-TTCGCCTTGACATTGTCAATTGTGTCGGACGACTCAACCTCCAGGGT 28210118 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || ||||| ||||||||| Sbjct 28210117 AATTGTCTTGCCAGTCAAGGTCTTTACAAAGATCTGCATG 28210078 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||| |||||||| ||||||| ||| || || Sbjct 28210524 AGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGG 28210465 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || ||||| ||||| || | ||||| ||||| || || | |||||| Sbjct 28210464 CCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCC 28210405 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || ||| | ||| ||||| || || |||| || Sbjct 28210404 TTGTCCTGGATC-TTTGCCTTCACGTTGTCAATGGTGTCCGAAGATTCAACCTCCAGTGT 28210346 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || || || |||||||| Sbjct 28210345 GATGGTCTTCCCTGTCAACGTCTTAACGAAGATCTGCAT 28210307 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || |||||| || || || ||||| ||||||| || || || Sbjct 27893828 AGGCGAAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAATCTGCCAGGGTGCGG 27893887 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| || ||||| |||| ||||| |||||||| || | ||||||| Sbjct 27893888 CCATCCTCAAGCTGTTTGCCAGCAAAGATTAGGCGCTGCTGGTCCGGTGGAATTCCCTCC 27893947 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || || |||||||| ||| || |||| || Sbjct 27893948 TTGTCCTGGATC-TTCGCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGAGT 27894006 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || ||||| || |||||| Sbjct 27894007 AATGGTCTTGCCTGTCAAGGTCTTGACAAAGATTTGCATG 27894046 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || | | ||||| |||||| ||| |||||| || ||||| ||||||| Sbjct 27894274 GCCACCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGC 27894333 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || ||||| || || | |||||| |||||||| || Sbjct 27894334 CAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 27894393 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| |||| || || | || || || ||| | Sbjct 27894394 GATGCCCTCCTTGTCCTGGATC-TTTGCCTTGACATTGTCGATCGTATCAGAAGACTCGA 27894452 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| | || |||||||| |||||||| Sbjct 27894453 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 27894501 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||||||||| | || || || Sbjct 27893372 AGGCGGAGCACCAGGTGTAGGGTAGACTCCTTCTGGATGTTATAATCCGCCAGAGTGCGT 27893431 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || ||||| ||||| || | ||||| ||||| || || | |||||| Sbjct 27893432 CCATCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCC 27893491 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || |||||| || || |||| || Sbjct 27893492 TTGTCCTGGATC-TTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCAACCTCCAGTGT 27893550 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| || || || ||||| ||||||||| Sbjct 27893551 AATGGTCTTCCCGGTCAAAGTCTTGACAAAGATCTGCATG 27893590 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||||| ||| |||||| || ||||| || || | || || || |||| ||| Sbjct 28209603 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCA 28209544 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || ||||| || | ||||| ||||| || || | ||||||||||| | Sbjct 28209543 AGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 28209484 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| || ||| | || ||||| ||| || || | ||| || ||||| Sbjct 28209483 ATC-TTTGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTTTT 28209425 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || |||||||| |||||||| Sbjct 28209424 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 28209395 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| ||||| ||| |||||| || ||||| || || | || || || | || || Sbjct 28415789 CACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTC 28415730 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| || || || || || || | ||||| |||||||| || | ||||||||||| Sbjct 28415729 AAGCTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 28415670 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | || ||| | |||||||| | ||| || || | || || || | Sbjct 28415669 GATC-TTGGCCTTCACGTTGTCGATTGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCT 28415611 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| | || || ||||| ||||||||| Sbjct 28415610 TGCCGGTGAGGGTCTTGACAAAGATCTGCATG 28415579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || ||| ||||| || || || ||||| | ||| || || Sbjct 27893600 AGGCGAAGCACCAGGTGCAGGGTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTGCGG 27893659 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || | ||||| |||||||| || | |||||| Sbjct 27893660 CCATCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGTGGAATGCCCTCC 27893719 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || || |||||||| ||| || |||| || Sbjct 27893720 TTGTCCTGGATC-TTCGCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGTGT 27893778 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || ||||| ||||||||| Sbjct 27893779 GATTGTCTTCCCTGTCAAGGTCTTGACAAAGATCTGCATG 27893818 >seq2 Length=59384932 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| ||||| ||| |||||| || ||||| || || | Sbjct 34837776 CGCCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 34837835 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| |||||||||| Sbjct 34837836 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 34837895 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| | |||| Sbjct 34837896 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC 34837954 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| || || || || || || | || ||||| || |||||||| || Sbjct 34837955 ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 34838007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729492598524