Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq1 113 4e-20 >seq3 Length=59935730 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | |||||| | || || || | || Sbjct 13693038 CATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACTTTGGAGGTCGAGTCATC 13693097 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | ||||| ||| ||||||||||| |||||||| || || || || Sbjct 13693098 GGATACGATTGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCA 13693157 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || | || ||| | ||| | | ||||||| Sbjct 13693158 GCAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACCCTGGCGGATTACAG 13693217 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| |||| | || | ||| |||| |||||||| Sbjct 13693218 CATTCAGAAAGAGTCTACCCTACACCTTGTCCTTCGTCTGCGTGGTGGCAT 13693268 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| |||||| | || || ||||| || || |||| Sbjct 2682380 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 2682321 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || ||||| ||||| || || Sbjct 2682320 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 2682261 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || || ||| | | || |||||| Sbjct 2682260 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCTGACTACAAC 2682201 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || | || ||||| |||| ||||| || Sbjct 2682200 ATTCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGTCTGCGTGGTGGTAT 2682151 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | ||||| ||||| || || | || Sbjct 13692584 ATGCAGATTTTTGTGAAGAC-CTCACTGGCAAGACAATTACCCTTGAGGTCGAGTCATCT 13692642 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || |||||||||||| || || ||||| || || || || Sbjct 13692643 GACACGATCGATAATGTGAAGGCAAAAATTCAAGATAAGGAGGGCATTCCTCCGGACCAG 13692702 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || | | || || || ||| | | || ||||| Sbjct 13692703 CAGCGTCTTATCTTCGCCGGGAAGTAGCTTGAGGATGGTCGCACCTTGGCGGACTACAAT 13692762 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || | || | ||| |||| |||||||| Sbjct 13692763 ATTCAGAAAGAGTCTACCCTGCACCTTGTCCTCCGTCTGCGTGGTGGCAT 13692812 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| ||||||||||||| || || ||| Sbjct 53307610 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTCC 53307551 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||||| || ||||| |||||||| || || || || Sbjct 53307550 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 53307491 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | |||| |||||||| || | || || | ||| | | ||||||||| Sbjct 53307490 CAAAGACTCATATTTGCCGGCAAGCAGCTAGAGGATGGCCGGACATTAGCTGATTACAAC 53307431 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | ||| | |||||| |||| || || Sbjct 53307430 ATCCAGAAGGAGTCTACTCTTCACCTTGTTCTTCGTTTGAGGGGCGGGAT 53307381 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || ||| | || || ||| | || Sbjct 13692810 CATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTTGAATCTTC 13692869 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| ||| ||||||||||| || ||||| || || || || Sbjct 13692870 TGACACGATAGATAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCA 13692929 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || | || || | ||| | | || || || Sbjct 13692930 GCAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGGCACACCTTAGCAGACTATAA 13692989 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| ||||| ||| | || | || | ||| |||| |||||||| Sbjct 13692990 CATTCAAAAAGAGTCCACCCTGCACCTTGTCCTTCGTCTGCGAGGTGGCAT 13693040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || ||||| ||||| || Sbjct 53307154 ATGCAAATCTTTGTCAAGACATTGACTGGAAAGACCATCACGCTTGAGGTGGAGAGCTCT 53307095 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| ||||| || || || || || ||||| Sbjct 53307094 GACACCATTGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAG 53307035 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || |||| || | ||| | | ||||||||| Sbjct 53307034 CAGAGGCTCATCTTTGCCGGAAAGCAGCTGGAGGATGGGCGTACCTTAGCAGATTACAAC 53306975 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | ||| | || |||| | || ||||| Sbjct 53306974 ATCCAAAAGGAGTCCACTCTTCATCTCGTCCTGCGCCTTCGTGGTGG 53306928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || ||| | || || || | || Sbjct 13693266 CATGCAGATCTTTGTCAAGACGCTTACTGGTAAGACCATCACTTTGGAGGTTGAGTCTTC 13693325 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || ||||||||||| || ||||| || || || || Sbjct 13693326 GGACACAATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATCCCCCCTGACCA 13693385 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || | || ||| | ||| | | |||||||| Sbjct 13693386 GCAGCGCCTGATTTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACCCTGGCGGATTACAA 13693445 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 13693446 CATCCAGAAGGAGTCCACC 13693464 >seq1 Length=75119905 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || ||||| || || | || Sbjct 27894501 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 27894442 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | ||||| ||| || || ||||| || ||||| || || || || Sbjct 27894441 GATACGATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 27894382 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | ||| | | ||||||||| Sbjct 27894381 CAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGATTACAAC 27894322 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| |||| | | | |||||||||| Sbjct 27894321 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCAGGCTCAGGGGTGGCAT 27894272 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || || |||||| | ||||||||||| || || | || Sbjct 55138557 ATGCAGATATTTGTGAAGACCCTCACAGGCAAGACAATTACTCTTGAGGTTGAGTCATCT 55138498 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||| || || ||||| || || || || Sbjct 55138497 GACACTATCGATAACGTGAAGGCGAAAATCCAAGATAAGGAGGGCATTCCTCCAGACCAG 55138438 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || | | || | ||| | | || || ||| Sbjct 55138437 CAGCGTCTTATCTTCGCCGGGAAGCAGCTCGCCGATGGGCGCACCTTGGCAGACTATAAC 55138378 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || | || | ||| |||| |||||||| Sbjct 55138377 ATTCAGAAAGAGTCCACCCTGCACCTTGTCCTTCGTCTGCGTGGTGGCAT 55138328 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||||||| | ||||| || | || || | ||| Sbjct 27881264 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACCCTCTAGGTCGAGTCTTCC 27881205 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| ||| || || ||||| || ||| | || || || || Sbjct 27881204 GACACGATCGACAATGTCAAGTCAAAGATCCAGGACAAGGAGGGCCTCCCCCCGGACCAG 27881145 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || |||| || | || | | ||||||||| Sbjct 27881144 CAGCGCCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACTCTCGCGGATTACAAC 27881085 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||| ||| | || | ||| | || | || |||||||| Sbjct 27881084 ATCCAGAAATAGTCCACCCTCCACCTTGTTCTTCGCCTACGTGGTGGCAT 27881035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || || || || || || | || Sbjct 28416035 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 28416094 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 28416095 GGACACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 28416154 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || | ||||| | ||| | | || ||||| Sbjct 28416155 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGGCTGACTACAA 28416214 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || | || | || |||||||| Sbjct 28416215 CATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGCCTCCGCGGTGGCAT 28416265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || || || || || | || Sbjct 28415807 CATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTC 28415866 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| || || ||||| || ||||| || || || || Sbjct 28415867 TGACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 28415926 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || | || || | ||| | | || ||||| Sbjct 28415927 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAA 28415986 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| ||| | || |||| || | | || |||||||| Sbjct 28415987 CATCCAAAAGGAGTCCACCCTCCACCTGGTGCTGAGGCTCCGTGGTGGCAT 28416037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || || || || || ||| | || Sbjct 28210307 ATGCAGATCTTCGTTAAGACGTTGACAGGGAAGACCATCACACTGGAGGTTGAATCTTCG 28210366 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || || ||||| || ||||| || || || || Sbjct 28210367 GACACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 28210426 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | || || | ||| || | ||||||||| Sbjct 28210427 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGATTACAAC 28210486 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||| | ||| | || ||||| Sbjct 28210487 ATTCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCCGTGGTGG 28210533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 27076 TTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAAT 27135 |||| |||||||| ||||| || || ||||| || | |||| | || || || |||| Sbjct 26504283 TTCAGGACAAAGAGGGCATTCCCCCGGATCAGCAAAGGCTAATTTTTGCTGGAAAGCAAT 26504342 Query 27136 TGGAAGACAGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 ||||||| | ||| |||| | |||||||||||||| || |||||||| | |||||| Sbjct 26504343 TGGAAGATGGG-CGAACGTTAGCTGATTACAACATTCAGAAAGAGTCGACGCTCCATTTG 26504401 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 || || | || ||||||| Sbjct 26504402 GTGCTGAGGCTGAGGGGTGG 26504421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| |||||| | |||||||| || || || |||| Sbjct 27894046 CATGCAAATCTTTGTCAAGACCTTGACAGGCAAGACCATTACTCTGGAGGTCGAGTCGTC 27893987 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || || ||||| || || || ||||| || || Sbjct 27893986 TGACACAATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGACCA 27893927 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| |||| | || |||||||| | || || | ||| | | |||||||| Sbjct 27893926 GCAGCGCCTAATCTTTGCTGGCAAACAGCTTGAGGATGGCCGCACCCTGGCAGATTACAA 27893867 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | || |||| | || | || |||||||| Sbjct 27893866 CATCCAGAAAGAATCCACTCTGCACCTGGTGCTTCGCCTCCGTGGTGGCAT 27893816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918247778560