Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq4 544 1e-149 seq28 540 1e-148 seq5 499 4e-136 seq1 399 3e-106 seq3 255 7e-63 >seq4 Length=48772488 Score = 544 bits (602), Expect = 1e-149 Identities = 657/894 (73%), Gaps = 0/894 (0%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || ||||||||||| || | Sbjct 22675743 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTATT 22675802 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 22675803 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCG 22675862 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 ||||||||| | ||||| |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 22675863 GCAATCGGATTGCACTTGTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGGTTATAC 22675922 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 22675923 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 22675982 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | | || ||||| |||||||| ||||||||| Sbjct 22675983 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 22676042 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || |||| || |||||| | | || || | ||||||||| Sbjct 22676043 TCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGC 22676102 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 22676103 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 22676162 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||||||||| || ||||| ||||| || ||| | || ||||| ||||| ||||| Sbjct 22676163 GCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTTTTTGGC 22676222 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 22676223 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACT 22676282 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||||||| || ||||| |||||||| || || Sbjct 22676283 ACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAAT 22676342 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| ||||| || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 22676343 ATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 22676402 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | |||||||| ||||| Sbjct 22676403 TCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCT 22676462 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || ||||| |||||||| || || ||||| |||||||| ||||| | Sbjct 22676463 TTAGGTATTAGTACTATGGCGTTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTT 22676522 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 22676523 GATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 22676582 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| |||||||||||||||||||| || || || |||||| Sbjct 22676583 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 22676636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 176750 AAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTG 176809 |||| ||||| ||| | ||||||||||| || ||||| |||||||| || || |||| Sbjct 45407192 AAAATGAATCTGCTAACGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTG 45407133 Query 176810 TAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAA 176869 | ||||| || ||| ||||| || | |||||||| |||||| |||||| |||| Sbjct 45407132 TGGCTGCTCATATTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACGACTCTC 45407073 Query 176870 GAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGG 176929 | | ||||| ||| | || || | || | || | |||||||| |||| | | Sbjct 45407072 CTTCTTTACACTTTTTCTTGGCTGCTTGGCCTGCAGTAGGAATCTGGTTCACTGATTTAG 45407013 Query 176930 GTGTTTGCACAATGG 176944 || || | || |||| Sbjct 45407012 GTATTAGTACTATGG 45406998 >seq28 Length=135199 Score = 540 bits (598), Expect = 1e-148 Identities = 656/894 (73%), Gaps = 0/894 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || ||||||||||| || || Sbjct 1015 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTT 956 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 955 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCG 896 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 ||||||||| | ||||| |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 895 GCAATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGGTTATAC 836 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 835 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 776 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | | || ||||| |||||||| ||||||||| Sbjct 775 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 716 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || |||| || |||||| | | || || | ||||||||| Sbjct 715 TCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGC 656 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 655 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 596 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 595 GCCGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTTTTCGGC 536 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 535 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACT 476 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||||||| || ||||| |||||||| || || Sbjct 475 ACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAAT 416 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| ||||| || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 415 ATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 356 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | |||||||| ||||| Sbjct 355 TCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCT 296 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || ||||| |||||||| || || ||||| |||||||| ||||| | Sbjct 295 TTAGGTATTAGTACTATGGCGTTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTT 236 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 235 GATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 176 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| |||||||||||||||||||| || || || |||||| Sbjct 175 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 122 Score = 131 bits (144), Expect = 2e-25 Identities = 202/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || |||||||| ||| || | | ||| | | || || || Sbjct 110358 ACCTATAACGATTCACTACCCTTACGAAAAATCAATTACACCGGAGCGTTTTCGGGGACG 110299 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | ||||| || || Sbjct 110298 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTTTGTGTTCGCGTATGTCCGAT 110239 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 |||| || | ||||||||| | |||| | | | ||| | |||| || | | Sbjct 110238 AGATCTCCCCATTGTGGATTGGAGATTTGAAAAGGCTGTTAAA-AGGAAACAATTGCTTA 110180 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || ||||| || || ||||| || |||| Sbjct 110179 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCAA 110120 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||| |||| |||| ||||| |||||||||||| || |||| | ||| Sbjct 110119 CAAGCTGTTTATCAATGACGGAAGAATATGAACTGTCTACTTATGA 110074 >seq5 Length=28563423 Score = 499 bits (552), Expect = 4e-136 Identities = 650/895 (73%), Gaps = 3/895 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || ||||||||||| || || Sbjct 14559455 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTT 14559396 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 14559395 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCG 14559336 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 ||||||||| | ||||| |||||||| || ||||| ||| | ||||| ||||| | ||| Sbjct 14559335 GCAATCGGATTGCACTTTTACCCAATTTGAGAAGCTGCATCCGTTGATGAATGATTATAC 14559276 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 14559275 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 14559216 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | | || |||| |||||||| ||||||||| Sbjct 14559215 GGTCGTGAGTGGGAACTTAGTTTCCGTTT-GGTATGCACCCTTGGATTGTTGTTGCATAT 14559157 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || |||| || |||||| | | || || | ||||||||| Sbjct 14559156 TCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGC 14559097 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| || ||||||||| |||||||||| Sbjct 14559096 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTAAACTTTATGATTGTATTCCAG 14559037 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||||||||| || ||||| | ||| || ||| | || ||||| ||||| || || Sbjct 14559036 GCAGAGCACAACATCCTTATGCATC-ATTTCACATGTTAGGTGTAGCTGGTGTTTTCGGC 14558978 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 14558977 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACT 14558918 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||||||| || ||||| |||||||| || || Sbjct 14558917 ACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAAT 14558858 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| || || || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 14558857 ATTGTGGCGGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 14558798 Query 176866 TCAA-GAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGC 176924 || | | | ||||||||| | || || | || || || | |||||||| ||||| Sbjct 14558797 TCTCTGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGC 14558738 Query 176925 AATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTT 176984 | ||| || | || |||| |||||||| || || ||||| |||||||| ||||| | Sbjct 14558737 TTTAGGTATTAGTACTATGGGGTTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGT 14558678 Query 176985 AGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGG 177044 || | ||| || ||| ||| |||| |||||| | |||||||| || ||||| Sbjct 14558677 TGATAGTCAAGGTCGTGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGG 14558618 Query 177045 TATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||||||| |||||||| |||||||||||||||||||| || || || |||||| Sbjct 14558617 TATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 14558563 >seq1 Length=75119905 Score = 399 bits (442), Expect = 3e-106 Identities = 497/681 (73%), Gaps = 0/681 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || ||||||||||| || || Sbjct 3929605 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTT 3929546 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 3929545 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCG 3929486 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 ||||||||| | ||||| |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 3929485 GCAATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGGTTATAC 3929426 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 3929425 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 3929366 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | | || ||||| |||||||| ||||||||| Sbjct 3929365 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 3929306 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || |||| || |||||| | | || || | ||||||||| Sbjct 3929305 TCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGC 3929246 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 3929245 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 3929186 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 3929185 GCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTTTTCGGC 3929126 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 3929125 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACT 3929066 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||||||| || ||||| |||||||| || || Sbjct 3929065 ACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAAT 3929006 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| ||||| || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 3929005 ATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 3928946 Query 176866 TCAAGAAGTCTTCACTTCTTC 176886 || | | | ||||||||| Sbjct 3928945 TCTCGTTCTTTACACTTCTTC 3928925 Score = 122 bits (134), Expect = 1e-22 Identities = 197/281 (70%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 19300 TAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCGTATAC 19359 |||| | || || |||||||| ||| || | | ||| | | || || || || | Sbjct 3907956 TAACGATTCACTACCCTTACGAAAAATCAATTACACCGGAGCGTTTTCGGGGACGAATCC 3907897 Query 19360 ACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATC 19419 ||| ||| ||||| || ||||| || ||||| || ||||| | ||||| || || ||| Sbjct 3907896 ACTTTGAATTTGATAAATGTATTGCTTGTGAAGTTTGTGTTCGCGTATGTCCGATAGATC 3907837 Query 19420 TACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTAT 19478 | || | ||||||||| | |||| | | | ||| | |||| || | |||||| Sbjct 3907836 TCCCCATTGTGGATTGGAGATTTGAAAAGGCTGTTAAA-AGGAAACAATTGCTTAATTAT 3907778 Query 19479 TCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAAC 19538 || || || |||| ||||| || || ||||| || || ||||| || ||||||| | Sbjct 3907777 AGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCAACAAGC 3907718 Query 19539 TGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 3907717 TGTTTATCAATGACGGAAGAATATGAACTATCTACTTATGA 3907677 Score = 118 bits (130), Expect = 1e-21 Identities = 199/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || |||||||| ||| || | | ||| | | || || || Sbjct 45406462 ACCTATAACGATTCACTACCCTTACGAAAAATCAATTACACCGGAGCGTTTTCGGGGACG 45406403 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| | ||||| || ||||| | ||||| || || Sbjct 45406402 AATCCACTTTGAATTTGATAAATGTATTGTTTGTGAAGTTTGTGTTCGCGTATGTCCGAT 45406343 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 |||| || | ||||||||| | |||| | | | || ||| || |||| Sbjct 45406342 AGATCTCCCCATTGTGGATTGGAGATTTGAAAAGGCTGTTAAGGAAACAATTGCTTA--- 45406286 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || ||| ||||| || || ||||| || || ||||| || |||| Sbjct 45406285 ATTATAGTATTGATTTCGGAATTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCAA 45406226 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||| |||| |||| ||||| |||||||||||| || |||| | ||| Sbjct 45406225 CAAGCTGTTTATCAATGACGGAAGAATATGAACTGTCTACTTATGA 45406180 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 176995 GGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTT 177054 ||| | || ||| ||||||| | |||| | |||||||| || ||||||| |||||| Sbjct 40901550 GGTCACGTTATTAATACATGGTCTGGTATCATCAACCGTGCTAATCTTGGTACGGAAGTA 40901491 Query 177055 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| | ||||||||||||||||| || | || ||||| Sbjct 40901490 ATGCACGAACACAATGCTCACAACTTCCCTCTAGGTCTACCTGCT 40901446 >seq3 Length=59935730 Score = 255 bits (282), Expect = 7e-63 Identities = 323/444 (73%), Gaps = 0/444 (0%) Strand=Plus/Plus Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715 || ||| | || ||||| ||||| || || || || || ||| || ||||| || Sbjct 16821697 CACATGTTAGGTGTAGCTGGTGTTTTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCC 16821756 Query 176716 CTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTAC 176775 | || || ||| | | || || || || ||||| ||||| || | |||||| Sbjct 16821757 TTGGTAACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTAC 16821816 Query 176776 AAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGT 176835 ||||| || ||||| |||||||| || || ||||| ||||| || ||||| ||||| || Sbjct 16821817 AAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGA 16821876 Query 176836 CTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCA 176895 | |||||||| |||||| |||||| ||||| | | | ||||||||| | || || Sbjct 16821877 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCT 16821936 Query 176896 TTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTT 176955 | || || || | |||||||| ||||| | ||| || | || ||||| |||||||| Sbjct 16821937 TGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCGTTCAACCTA 16821996 Query 176956 AACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGG 177015 || || ||||| |||||||| ||||| | || | ||| || ||| ||| ||| Sbjct 16821997 AATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 16822056 Query 177016 GGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 177075 | |||||| | |||||||| || |||||||||||||| |||||||| |||||||||||| Sbjct 16822057 GCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCAC 16822116 Query 177076 AACTTCCCACTTGACCTTGCTGCT 177099 |||||||| || || || |||||| Sbjct 16822117 AACTTCCCTCTAGATCTAGCTGCT 16822140 Score = 120 bits (132), Expect = 4e-22 Identities = 193/275 (70%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || |||||||| ||| || | | ||| | || || || Sbjct 28296296 ACCTATAACGATTCACTACCCTTACGAAAAATCAATTACACCGGAGCTTTTTCGGGGACG 28296237 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | ||||| || || Sbjct 28296236 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTTTGTGTTCGCGTATGTCCGAT 28296177 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 |||| || | ||||||||| | |||| | | | ||| | |||| || | | Sbjct 28296176 AGATCTCCCCATTGTGGATTGGAGATTTGAAAAGGCTGTTAAA-AGGAAACAATTGCTTA 28296118 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || ||||| || || ||||| || |||| Sbjct 28296117 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCAA 28296058 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTG 19568 ||| |||| |||| ||||| |||||||||||| || Sbjct 28296057 CAAGCTGTTTATCAATGACGGAAGAATATGAACTG 28296023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494188776960