Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq1 100 2e-16 seq3 98.7 7e-16 >seq2 Length=59384932 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || || ||||| || || || || ||| Sbjct 10639458 AAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACGCTGGAGGTGGAGTCC 10639399 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || || || || || | || || || Sbjct 10639398 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCGGAC 10639339 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || |||||||| || ||||| |||| ||||| | | ||| ||| Sbjct 10639338 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTAC 10639279 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 10639278 AACATCCAGAAGGAGTCCAC 10639259 >seq1 Length=75119905 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || || ||||| ||||| || || || | Sbjct 27894273 ATGCAAATCTTTGTGAAGACCCTTACTGGCAAGACCATCACACTCGAGGTCGAGTCGTCT 27894214 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||| || || | || ||||| || Sbjct 27894213 GACACGATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 27894155 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||||||||||||| ||||| | | |||||||| Sbjct 27894154 GCAGCGCCTCATCTTTGCTGGCAAGCAACTGGAAGACGGTCGCACCCTGGCAGATTACAA 27894095 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 || || || |||||||| || || Sbjct 27894094 TATCCAGAAGGAGTCCACCTTGCA 27894071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||| || | || || || || ||||| || || ||||| || | Sbjct 28210306 AATGCAGATCTTCGTTAAGACGTTGACAGGGAAGACCATCACACTGGAGGTTGAATCTTC 28210365 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || ||| || ||||| || || | || ||||| || Sbjct 28210366 GGACACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 28210425 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| | | |||||||| Sbjct 28210426 GCAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGATTACAA 28210485 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 28210486 CATTCAGAAGGAGTCCAC 28210503 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| | Sbjct 28209623 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACGCTGGAGGTCGAGTCCTCT 28209682 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || || | || || || || Sbjct 28209683 GACACGATCGACAATGTGAAGGCGAAGA-TCCAGGATAAGGAGGGCATCCCCCCGGACCA 28209741 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || |||| || || | | ||| ||||| Sbjct 28209742 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 28209801 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || |||||| | ||| | || | ||| |||| || || Sbjct 28209802 CATCCAGAAGGAATCCACACTCCATCTGGTGCTCAGGCTGCGTGGTGG 28209849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||| | |||||||| || || || |||||||| || || || || ||||| || ||||| Sbjct 55138563 CTTCAGATGCAGATATTTGTGAAGACCCTCACAGGCAAGACAATTACTCTTGAGGTTGAG 55138504 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 || | |||||| | || | | || ||||| || || || || | || ||| Sbjct 55138503 TCATCTGACACTATCGATAACGTGAAGGCGAAAATCCAAGATAAGGAGGGCATTCCTCCA 55138444 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || |||||| | || || ||||| || || || | || | ||||| || | || Sbjct 55138443 GACCAGCAGCGTCTTATCTTCGCCGGGAAGCAGCTCGCCGATGGGCGCACCTTGGCAGAC 55138384 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 || ||||| || ||||||||||| Sbjct 55138383 TATAACATTCAGAAAGAGTCCAC 55138361 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || || | Sbjct 27894501 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 27894442 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || |||| | | ||||| || || | || || || || Sbjct 27894441 GATACGATCGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCA 27894383 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || ||||| || | ||||| | | |||||||| Sbjct 27894382 GCAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGATTACAA 27894323 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 27894322 CATCCAGAAGGAGTCCAC 27894305 >seq3 Length=59935730 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || |||||| | || ||||| || | Sbjct 13692811 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTTGAATCTTCT 13692870 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||| ||| ||||| || || | || ||||| || Sbjct 13692871 GACACGATAGATAATGTCAAGGC-AAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCA 13692929 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | | ||| |||| || || || Sbjct 13692930 GCAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGGCACACCTTAGCAGACTATAA 13692989 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 13692990 CATTCAAAAAGAGTCCAC 13693007 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| |||||||| || || || || ||||| || ||||| | | Sbjct 53307610 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTCC 53307551 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| | ||||| ||||| | || ||||| || Sbjct 53307550 GATACCATTGACAATGTGAAGGCCAAAA-TCCAGGACAAGGAAGGCATTCCTCCAGACCA 53307492 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | |||||||||||||| || || || || | || || |||| |||||||| Sbjct 53307491 GCAAAGACTCATATTTGCCGGCAAGCAGCTAGAGGATGGCCGGACATTAGCTGATTACAA 53307432 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 53307431 CATCCAGAAGGAGTCTAC 53307414 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || ||||| || ||||| || || || || | | Sbjct 53307155 AATGCAAATCTTTGTCAAGACATTGACTGGAAAGACCATCACGCTTGAGGTGGAGAGCTC 53307096 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || ||| ||||| || || | || || ||||| Sbjct 53307095 TGACACCATTGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCA 53307036 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || ||||| || | || || |||| |||||||| Sbjct 53307035 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTGGAGGATGGGCGTACCTTAGCAGATTACAA 53306976 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 53306975 CATCCAAAAGGAGTCCAC 53306958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009484654224