Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 190 2e-43 seq3 152 5e-32 seq1 149 6e-31 seq4 131 2e-25 seq5 98.7 9e-16 >seq2 Length=59384932 Score = 190 bits (210), Expect = 2e-43 Identities = 186/237 (78%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | |||||| || || ||| ||||||||| ||||| ||||||| Sbjct 34837776 CGCCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 34837835 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| |||||||||||||||||||| || |||||||| ||||||| | Sbjct 34837836 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 34837895 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || |||| ||| | | | ||||| |||||| Sbjct 34837896 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCCGAGGACTCC 34837954 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 ||||||| ||| || || || |||||||| ||||| ||||| |||||||| ||| || Sbjct 34837955 ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTAGCG 34838011 Score = 174 bits (192), Expect = 1e-38 Identities = 180/233 (77%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | || || | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 10639227 CGCCTCCCCTCAGTCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 10639286 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| || ||||||||||||||||| || || ||||| ||||||| | Sbjct 10639287 CGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGTG 10639346 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||| ||| ||| || |||| ||| | | | ||||| |||||| Sbjct 10639347 GGATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCCGAGGACTCC 10639405 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| ||| || || |||||||| || ||||| ||||| |||||||| || Sbjct 10639406 ACCTCCAGCGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATCTT 10639458 >seq3 Length=59935730 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | || || || || ||| ||||||||| | ||| ||||||| Sbjct 31827564 CGCCGCCGCGGAGCCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCGG 31827623 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 || |||||| |||| || |||||||| |||||||| || || ||||| || |||| | Sbjct 31827624 CCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGCTCCGGCG 31827683 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | || | |||||||||| | || ||||| | | ||||| ||||||| Sbjct 31827684 GGACCCCCTCCTTGTCCTGCACCTTGGCCTTCACGTTCTCGATCGTGTCCGATGACTCCA 31827743 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| ||||| || |||||||||||||| ||||| |||||||| Sbjct 31827744 CCTCCAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 31827792 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || || ||| ||||||||| ||||| ||||| | Sbjct 3234363 GCCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3234422 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| ||||| ||||| ||||| ||||||| ||| Sbjct 3234423 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 3234482 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| || |||| ||| | | | |||||| ||| | Sbjct 3234483 AATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCGGAGCTCTCAA 3234541 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| || || |||||||| Sbjct 3234542 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3234590 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || ||| ||||||||| ||||| ||||| | Sbjct 2681470 CCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2681529 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || ||||||||||| ||||||| |||| Sbjct 2681530 AGGGTGCGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 2681589 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||| ||| | | | ||||| |||||||| Sbjct 2681590 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTCAGATGACTCCAC 2681648 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || || |||||||| Sbjct 2681649 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2681696 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||||| | Sbjct 2681926 CCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 2681985 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| ||||| ||||||| |||| Sbjct 2681986 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 2682045 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| || |||| ||| | | | ||||| |||||||| Sbjct 2682046 ATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTCAGATGACTCCAC 2682104 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || || |||||||| Sbjct 2682105 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682152 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 2681698 CCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2681757 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| ||||| ||||| ||||||| |||| Sbjct 2681758 AGGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2681817 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| ||| || ||||| || | | | ||||| |||| || Sbjct 2681818 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGCTC---TC 2681873 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 2681874 CACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2681924 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| ||| ||||||||| ||||| || || | Sbjct 13693493 CCACCACGGAGGCGGAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCC 13693434 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| |||| || |||||||| || || || ||||||||||| ||||| | ||| Sbjct 13693433 AGGGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAAATCAGGCGCTGCTGGTCAGGGGGG 13693374 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | ||| | || || | ||| | | | ||||| ||||| || Sbjct 13693373 ATGCCCTCCTTGT-CTTGAATCTTCGCCTTGACGTTGTCGATTGTGTCCGAAGACTCAAC 13693315 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || ||||| || |||||||| || || ||||||||| Sbjct 13693314 CTCCAAAGTGATGGTCTTACCAGTAAGCGTCTTGACAAAGATCTGCATG 13693266 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||||||||||||| ||||| | | Sbjct 2682154 CCACCACGCAGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCG 2682213 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| || || ||||| ||||||| || Sbjct 2682214 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2682273 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || || | |||| | | | ||||| |||||| || Sbjct 2682274 ATGCCCTCCTTATCC-TGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGACGACTCAAC 2682332 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || || |||||||| Sbjct 2682333 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682380 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||||||| ||||| ||||| | Sbjct 3234592 CCACCACGCAGACGCAGCACTAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 3234651 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || |||| ||||| ||||||| ||| Sbjct 3234652 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCCGGGGGG 3234711 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | || | | | ||||| |||||| || Sbjct 3234712 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACATTGTCAATGGTGTCTGACGACTCAAC 3234770 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 3234771 CTCAAGGGTGATGGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATG 3234819 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| | Sbjct 3234819 GCCTCCCCGAAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGC 3234878 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||||||||| ||||| || |||||||| ||||| | ||| Sbjct 3234879 AAGGGTCCTGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGGCGCTGCTGGTCAGGGGG 3234938 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || |||| || | | | ||||| ||||||| Sbjct 3234939 GATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACATTGTCGATGGTGTCAGATGACTCCA 3234997 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||||| || || || ||||| Sbjct 3234998 CCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATTTGCAT 3235046 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || ||||| ||| ||| || |||||||||||||| | Sbjct 13693038 GCCACCTCGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTTTGAATGTTATAGTCTGC 13692979 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||| || | || || |||||||| || || || || |||||||| ||||| | ||| Sbjct 13692978 TAAGGTGTGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGG 13692919 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| | ||| | ||||| | || | | ||||| || || | Sbjct 13692918 GATGCCCTCCTTGT-CTTGAATCTTTGCCTTGACATTATCTATCGTGTCAGAAGATTCAA 13692860 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || || || ||||| || |||||||||||| Sbjct 13692859 CCTCCAAAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATG 13692810 Score = 107 bits (118), Expect = 2e-18 Identities = 167/231 (72%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || ||||| || ||| |||||||| || ||||| | Sbjct 13692810 GCCACCACGCAGACGGAGGACAAGGTGCAGGGTAGACTCTTTCTGAATATTGTAGTCCGC 13692751 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || |||| ||| |||||||| || || ||||| ||||||| || Sbjct 13692750 CAAGGTGCGACCATCCTCAAGCTACTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGG 13692691 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCA-ACGA-CGACACAGTGTCGCTCGACTC 41811 || || |||||| || ||| ||||||| |||| | | ||| ||||| ||||| Sbjct 13692690 AATGCCCTCCTTATCT-TGAATTTTTGCCTTCACATTATCGATC--GTGTCAGATGACTC 13692634 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || ||||| || ||||||||||| Sbjct 13692633 GACCTCAAGGGTAATTGTCTTGCCAGTGAG-GTCTTCACAAAAATCTGCAT 13692584 >seq1 Length=75119905 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||||||||| ||| |||||||| || || || || | Sbjct 28210305 CCACCGCGGAGACGAAGCACCAGATGCAGAGTGGATTCCTTCTGGATATTGTAATCTGCA 28210246 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| || |||||||| ||||||| || Sbjct 28210245 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG 28210186 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | || | | | |||||| |||||| || Sbjct 28210185 ATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACATTGTCAATTGTGTCGGACGACTCAAC 28210127 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| |||||||| || ||||||||| Sbjct 28210126 CTCCAGGGTAATTGTCTTGCCAGTCAAGGTCTTTACAAAGATCTGCATG 28210078 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | ||||||||| || ||| |||||||| ||||| ||||||| Sbjct 28209850 GCCACCACGCAGCCTGAGCACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGC 28209791 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| || |||||||||||||| || || |||||||| ||||||| ||| Sbjct 28209790 GAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGG 28209731 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || |||| || | | | ||||| ||||| | Sbjct 28209730 GATGCCCTCCTTATCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCAGAGGACTCGA 28209672 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| || || || || || || ||||| ||||| ||||||||| Sbjct 28209671 CCTCCAGCGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATG 28209622 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| ||||| ||| ||||||||||||||| || || | Sbjct 28210533 CCACCACGGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCTGCA 28210474 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || || |||||||| ||||| | ||| Sbjct 28210473 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 28210414 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| ||| |||| ||| | | | ||||| || || || Sbjct 28210413 ATGCCCTCCTTGTCCTGGATCTTTGCCTTC-ACGTTGTCAATGGTGTCCGAAGATTCAAC 28210355 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| |||||| ||||| |||||||| Sbjct 28210354 CTCCAGTGTGATGGTCTTCCCTGTCAACGTCTTAACGAAGATCTGCAT 28210307 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| || || ||| ||||||||| ||||| ||||| | Sbjct 28415579 GCCACCACGCAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGC 28415520 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || |||||||||||||| ||||| || |||||||| ||||||| ||| Sbjct 28415519 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCCGGGGG 28415460 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| ||| | | | ||||| ||||| | Sbjct 28415459 GATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATCGTGTCCGAGGACTCGA 28415401 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| || || || || || || ||||| || || |||||||| Sbjct 28415400 CCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 28415352 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| ||||| ||| |||||||| || || || || | Sbjct 27893590 GCCACCACGGAGGCGAAGCACCAGGTGCAGGGTGGATTCCTTCTGGATATTGTAATCAGC 27893649 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||||||||| || |||||||| ||||||| || Sbjct 27893650 AAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGTGG 27893709 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 || || |||||||||| ||| || ||||| | | || | ||||| |||||| Sbjct 27893710 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCG--ATTGTGTCAGACGACTCG 27893767 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || || || || |||| ||||| || || ||||||||| Sbjct 27893768 ACCTCCAGTGTGATTGTCTTCCCTGTCAAGGTCTTGACAAAGATCTGCATG 27893818 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| |||| ||| |||||||| || || || || | Sbjct 28210078 GCCACCACGGAGGCGAAGCACCAGGTGCAAGGTGGATTCCTTCTGGATATTGTAATCTGC 28210019 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| || |||||||| ||||||| ||| Sbjct 28210018 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGG 28209959 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| ||| ||| |||| || | | | ||||| ||||| | Sbjct 28209958 AATGCCCTCCTTATCCTGGATCTTTGCCTTC-ACATTGTCGATCGTGTCAGAGGACTCAA 28209900 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || || || ||||| ||||| ||||||||| Sbjct 28209899 CCTCCAGAGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATG 28209850 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || ||||| ||| ||| ||||||||||||||||| | Sbjct 55138330 GCCACCACGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTCTGAATGTTATAGTCTGC 55138389 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||||| | ||| |||||||||| |||||||| || || ||||| ||||| | || Sbjct 55138390 CAAGGTGCGCCCATCGGCGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGAGG 55138449 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| || |||||| |||| ||| | | |||||| ||||| | Sbjct 55138450 AATGCCCTCCTTATCTTGGATTTTCGCCTTC-ACGTTATCGATAGTGTCAGATGACTCAA 55138508 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || || |||||||| Sbjct 55138509 CCTCAAGAGTAATTGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 55138557 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | ||||| || || ||| ||||||||| ||||| ||||| | Sbjct 28415807 GCCACCACGCAGCCTGAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGC 28415748 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| || || ||||| ||||||| ||| Sbjct 28415747 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCCGGGGG 28415688 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| ||| | | | ||||| ||||| | Sbjct 28415687 GATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATTGTGTCAGAGGACTCGA 28415629 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| || || || || || || ||||| || || ||||||||| Sbjct 28415628 CCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 28415579 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| || || ||| |||||| || ||||| ||||| | Sbjct 28416035 GCCACCACGGAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGC 28415976 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| || || | ||| ||||||| ||| Sbjct 28415975 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGG 28415916 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| ||| |||| ||| | | | ||||| ||||| | Sbjct 28415915 GATGCCCTCCTTGTCCTGGATCTTTGCCTTC-ACGTTGTCGATGGTGTCAGAAGACTCGA 28415857 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| || || || || || || ||||| || || ||||||||| Sbjct 28415856 CCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 28415807 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || ||||| || | || || || || ||| || ||||| ||||| || || | Sbjct 27881037 GCCACCACGTAGGCGAAGAACAAGGTGGAGGGTGGACTATTTCTGGATGTTGTAATCCGC 27881096 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||||| | || || ||||||||||| ||||| || |||||||| ||||||| ||| Sbjct 27881097 GAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGG 27881156 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| ||| ||| || | || | |||||| ||||| Sbjct 27881157 GAGGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCG--ATCGTGTCGGAAGACTCG 27881214 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || || |||||||| Sbjct 27881215 ACCTAGAGGGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 27881264 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| |||||||| || | Sbjct 27893362 GCCACCACGGAGGCGGAGCACCAGGTGTAGGGTAGACTCCTTCTGGATGTTATAATCCGC 27893421 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||| || || || ||||||||||| ||||| | ||| Sbjct 27893422 CAGAGTGCGTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGGGG 27893481 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| ||| | | | ||||| || || | Sbjct 27893482 GATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCGATGGTGTCTGAAGATTCAA 27893540 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || |||| ||||| || || ||||||||| Sbjct 27893541 CCTCCAGTGTAATGGTCTTCCCGGTCAAAGTCTTGACAAAGATCTGCATG 27893590 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | || || || || || ||||||||| ||||| ||||| | Sbjct 28416263 GCCACCGCGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 28416204 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || |||||||||||||| || || || || ||||| ||||||| ||| Sbjct 28416203 CAGGGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGG 28416144 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| || | || || | || | | | ||||| ||||| | Sbjct 28416143 AATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACATTGTCAATTGTGTCCGAAGACTCAA 28416085 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| || || ||||||||| Sbjct 28416084 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 28416035 Score = 102 bits (112), Expect = 8e-17 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCA-GCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||| ||||| || || | |||||| |||| | ||| ||||||||||||||| || || | Sbjct 27860960 GCCACCGCGGAGGCGGAGCACCAGGTGCAAGGGTGGGCTCCTTCTGAATGTTGTAATCCG 27861019 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||||| | || ||||||||||| || || || || |||||||||||||| | || Sbjct 27861020 CATGAGTGCGGCCATCCTCGAGCTGCTTACCTGCAAAGATTAGGCGCTGTTGGTCTGGGG 27861079 Query 41754 GAACGCTCTCCTTGTC 41769 ||| || || |||||| Sbjct 27861080 GAATGCCCTTCTTGTC 27861095 >seq4 Length=48772488 Score = 131 bits (144), Expect = 2e-25 Identities = 173/237 (73%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || |||||| ||||||||| ||||| ||||||| |||||||| Sbjct 34033514 AGGCGGAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 34033455 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||| | ||||| || || ||||| ||||||| || | || |||| Sbjct 34033454 CCGTCCTCCAGCTAC------GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCC 34033401 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || || || | ||| | | | ||||| ||||||||||||| ||| Sbjct 34033400 TTGTCC-TGCACCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACCTCCAGCGT 34033342 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATGGATCTCGC 41880 ||||| || || ||||| ||||| ||||| |||||||| || || |||||||| Sbjct 34033341 GATCGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTTGGTGA--GATCTCGC 34033287 >seq5 Length=28563423 Score = 98.7 bits (108), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || ||| ||||||||| ||||| ||||| | Sbjct 25045065 GCCACCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 25045006 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT----CAGGCGCTGTTGGTCCG 41750 ||||||||| |||| |||||||||||||| ||||| || | ||||||| ||||||| Sbjct 25045005 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCTGGCGCTGCTGGTCCG 25044946 Query 41751 CGGGAACGCTCTCCTTGTCC 41770 || | || ||||||||| Sbjct 25044945 GCGGGATGCCTTCCTTGTCC 25044926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303838193600