Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 3e-32
seq3 145 2e-29
seq6 107 4e-18
seq4 107 4e-18
seq5 105 1e-17
seq1 105 1e-17
seq7 104 5e-17
seq11008 100 6e-16
>seq2
Length=243061704
Score = 154 bits (170), Expect = 3e-32
Identities = 316/461 (69%), Gaps = 9/461 (2%)
Strand=Plus/Minus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|| |||||||| |||||||| | | || || || || || | || || || |||
Sbjct 119861062 TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 119861003
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
||||||||||| ||||| ||| ||| | ||||| |||||| | || ||||||
Sbjct 119861002 TGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 119860943
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCT 230351
||||| ||||||||||| || || | |||| || || | | || ||
Sbjct 119860942 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCG-CGTGCCTCCTCTACGAGCTCCT 119860884
Query 230352 CCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409
|| | |||||| || | || | ||| | ||| | | || || || || | |
Sbjct 119860883 CCGCAGCAAGCTCGACGAGTCCCGC--GTCCGCGAGATCGTCGCCGACGCCGTGGACATC 119860826
Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468
|| |||||| | || ||||| | || ||||| || | |||||||||| | ||
Sbjct 119860825 GAGCGCGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGCGCT 119860767
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| | |||||||||| ||||| ||||||||| | | | ||||| || | | | ||
Sbjct 119860766 CATGAGCGAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCACTAGGGTGCAACAA 119860707
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|||||||| | |||||||| | | ||||||||||| ||||| || || |||||
Sbjct 119860706 GATGTACAACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGAC 119860647
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628
|||||||||||| ||||||||| ||||||| ||| ||||||
Sbjct 119860646 CAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCCT 119860606
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 174557524 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 174557583
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 174557584 CCCACGGTGGGC 174557595
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 51757013 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 51757072
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 51757073 CCCCACGGTGGGC 51757085
>seq3
Length=300915289
Score = 145 bits (160), Expect = 2e-29
Identities = 319/471 (68%), Gaps = 8/471 (2%)
Strand=Plus/Minus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|| |||||||| |||||||||| | || || || || || | || || || |||
Sbjct 250096069 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 250096010
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
||||||||||| ||||| ||| || | ||||| || ||| | || ||||||
Sbjct 250096009 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAG 250095950
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352
||||| ||||||||||| |||||| | |||| | || | || |||
Sbjct 250095949 CTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 250095890
Query 230353 CAGAACAAGCTACCATTCGAGA--CG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409
| | |||||| | | |||| || ||| | ||| | | || || ||||| | |
Sbjct 250095889 CGCAGCAAGCT-CGA--CGAGGACCGTGTCCGCGAGATCGTCGCCGACGCCGTTGACATC 250095833
Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468
|| |||||| | || ||||| | || ||||| || | |||||||||| | ||
Sbjct 250095832 GAGCGCGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGGGCT 250095774
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| | ||||||||||| ||||| ||||||||| | | | || || || || ||||
Sbjct 250095773 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACAAGAA 250095714
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|||||||| ||||| || | | ||||||||||| ||||| || || |||||
Sbjct 250095713 GATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGAC 250095654
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|||||||||||| ||||| ||| | || || |||| | | ||||||||
Sbjct 250095653 CAACTTCTTCGAGAAGCGCGTCGGGGAGTACCAGAAGGCGTCCGTGATGAA 250095603
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 165704 ACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT 165763
||| ||||| ||||||||||||||||||||| | || || |||| || |||||| ||||
Sbjct 72030282 ACGGTTGCCTGTCTAGCTCAGTCGGTAGAGCACAAGGCTCTTAACCTAGTGGTCATGGGG 72030341
Query 165764 TCGAGCCCCACGATGGGC 165781
|||||||||||| |||||
Sbjct 72030342 TCGAGCCCCACGGTGGGC 72030359
>seq6
Length=240577051
Score = 107 bits (118), Expect = 4e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||||||||||||||||||||||||| || || |||| || ||||||||||||||||
Sbjct 12195062 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 12195121
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 12195122 GCCCCACGGTGGGC 12195135
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 34169334 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34169275
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 34169274 CCCACGGTGGGC 34169263
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 60079677 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 60079618
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 60079617 CCCACGGTGGGC 60079606
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 64518797 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 64518738
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 64518737 CCCACGGTGGGC 64518726
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 64519745 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 64519686
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 64519685 CCCACGGTGGGC 64519674
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||| ||||||||||||||
Sbjct 60079833 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGCTCGTGGGTTCGAGC 60079774
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 60079773 CCCACGGTGGGC 60079762
>seq4
Length=191835039
Score = 107 bits (118), Expect = 4e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||||||||||||||||||||||||| || || |||| || ||||||||||||||||
Sbjct 11740385 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 11740444
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 11740445 GCCCCACGGTGGGC 11740458
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 11989216 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11989275
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 11989276 CCCACGGTGGGC 11989287
>seq5
Length=158699395
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||||||||||||||||||||||||| || || |||| || |||||||||||||||||
Sbjct 115978206 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 115978147
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 115978146 CCCCACGGTGGGC 115978134
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||| |||||||||||| ||||||||| || || |||| || ||||||||||||| ||||
Sbjct 86895771 GCCCATCTAGCTCAGTCCGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGC 86895830
Query 165770 CCCACG 165775
||||||
Sbjct 86895831 CCCACG 86895836
>seq1
Length=275477322
Score = 105 bits (116), Expect = 1e-17
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 165704 ACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT 165763
|||| ||||||||||||||||||||||||||| || || |||| || ||||||||||||
Sbjct 355581 ACGCAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGT 355522
Query 165764 TCGAGCCCCACGATGGGC 165781
|||||||||||| |||||
Sbjct 355521 TCGAGCCCCACGGTGGGC 355504
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||||||||||||||||||||||||| || || |||| || |||||||||||||||||
Sbjct 223957818 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 223957759
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 223957758 CCCCACGGTGGGC 223957746
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 84278386 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84278327
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 84278326 CCCACGGTGGGC 84278315
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 104254199 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 104254140
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 104254139 CCCACGGTGGGC 104254128
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 218586068 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 218586009
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 218586008 CCCACGGTGGGC 218585997
Score = 96.9 bits (106), Expect = 7e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG-TTCGAG 165768
||||||||||||||||||||||||||| || || |||| || ||||||||||| ||||||
Sbjct 156350762 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTCGAG 156350703
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 156350702 CCCCACGGTGGGC 156350690
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 5/72 (7%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| | |||| || ||||||||||||||||||
Sbjct 197304888 GCCCGTCTAGCTCAGTTGGTAGAGCGC-----TCTTAACCTTGTGGTCGTGGGTTCGAGC 197304834
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 197304833 CCCACGGTGGGC 197304822
>seq7
Length=154015841
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 117072076 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 117072017
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 117072016 CCCACGGTGGGC 117072005
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 131030803 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 131030744
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 131030743 CCCACGGTGGGC 131030732
>seq11008
Length=369007
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||||||||||||||||||||||||| | || |||| || |||||||||||||||||
Sbjct 252993 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAACGCTCTTAACCTTGTGGTCGTGGGTTCGAG 252934
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 252933 CCCCACGGTGGGC 252921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057547660339070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |