Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq3 145 2e-29 seq6 107 4e-18 seq4 107 4e-18 seq5 105 1e-17 seq1 105 1e-17 seq7 104 5e-17 seq11008 100 6e-16 >seq2 Length=243061704 Score = 154 bits (170), Expect = 3e-32 Identities = 316/461 (69%), Gaps = 9/461 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||| | | || || || || || | || || || ||| Sbjct 119861062 TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 119861003 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| ||| | ||||| |||||| | || |||||| Sbjct 119861002 TGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 119860943 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCT 230351 ||||| ||||||||||| || || | |||| || || | | || || Sbjct 119860942 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCG-CGTGCCTCCTCTACGAGCTCCT 119860884 Query 230352 CCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || | |||||| || | || | ||| | ||| | | || || || || | | Sbjct 119860883 CCGCAGCAAGCTCGACGAGTCCCGC--GTCCGCGAGATCGTCGCCGACGCCGTGGACATC 119860826 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || |||||| | || ||||| | || ||||| || | |||||||||| | || Sbjct 119860825 GAGCGCGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGCGCT 119860767 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | |||||||||| ||||| ||||||||| | | | ||||| || | | | || Sbjct 119860766 CATGAGCGAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCACTAGGGTGCAACAA 119860707 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| | |||||||| | | ||||||||||| ||||| || || ||||| Sbjct 119860706 GATGTACAACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGAC 119860647 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 |||||||||||| ||||||||| ||||||| ||| |||||| Sbjct 119860646 CAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCCT 119860606 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 174557524 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 174557583 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 174557584 CCCACGGTGGGC 174557595 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 51757013 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 51757072 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 51757073 CCCCACGGTGGGC 51757085 >seq3 Length=300915289 Score = 145 bits (160), Expect = 2e-29 Identities = 319/471 (68%), Gaps = 8/471 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 250096069 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 250096010 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| || ||| | || |||||| Sbjct 250096009 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAG 250095950 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| |||||| | |||| | || | || ||| Sbjct 250095949 CTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 250095890 Query 230353 CAGAACAAGCTACCATTCGAGA--CG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | | |||||| | | |||| || ||| | ||| | | || || ||||| | | Sbjct 250095889 CGCAGCAAGCT-CGA--CGAGGACCGTGTCCGCGAGATCGTCGCCGACGCCGTTGACATC 250095833 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || |||||| | || ||||| | || ||||| || | |||||||||| | || Sbjct 250095832 GAGCGCGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGGGCT 250095774 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| ||||||||| | | | || || || || |||| Sbjct 250095773 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACAAGAA 250095714 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||| || | | ||||||||||| ||||| || || ||||| Sbjct 250095713 GATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGAC 250095654 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||||||||| ||||| ||| | || || |||| | | |||||||| Sbjct 250095653 CAACTTCTTCGAGAAGCGCGTCGGGGAGTACCAGAAGGCGTCCGTGATGAA 250095603 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 165704 ACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT 165763 ||| ||||| ||||||||||||||||||||| | || || |||| || |||||| |||| Sbjct 72030282 ACGGTTGCCTGTCTAGCTCAGTCGGTAGAGCACAAGGCTCTTAACCTAGTGGTCATGGGG 72030341 Query 165764 TCGAGCCCCACGATGGGC 165781 |||||||||||| ||||| Sbjct 72030342 TCGAGCCCCACGGTGGGC 72030359 >seq6 Length=240577051 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 12195062 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 12195121 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 12195122 GCCCCACGGTGGGC 12195135 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 34169334 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34169275 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34169274 CCCACGGTGGGC 34169263 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 60079677 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 60079618 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 60079617 CCCACGGTGGGC 60079606 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 64518797 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 64518738 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 64518737 CCCACGGTGGGC 64518726 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 64519745 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 64519686 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 64519685 CCCACGGTGGGC 64519674 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||| |||||||||||||| Sbjct 60079833 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGCTCGTGGGTTCGAGC 60079774 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 60079773 CCCACGGTGGGC 60079762 >seq4 Length=191835039 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 11740385 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 11740444 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 11740445 GCCCCACGGTGGGC 11740458 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 11989216 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11989275 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11989276 CCCACGGTGGGC 11989287 >seq5 Length=158699395 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 115978206 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 115978147 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 115978146 CCCCACGGTGGGC 115978134 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||| ||||||||| || || |||| || ||||||||||||| |||| Sbjct 86895771 GCCCATCTAGCTCAGTCCGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGC 86895830 Query 165770 CCCACG 165775 |||||| Sbjct 86895831 CCCACG 86895836 >seq1 Length=275477322 Score = 105 bits (116), Expect = 1e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 165704 ACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT 165763 |||| ||||||||||||||||||||||||||| || || |||| || |||||||||||| Sbjct 355581 ACGCAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGT 355522 Query 165764 TCGAGCCCCACGATGGGC 165781 |||||||||||| ||||| Sbjct 355521 TCGAGCCCCACGGTGGGC 355504 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 223957818 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 223957759 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 223957758 CCCCACGGTGGGC 223957746 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 84278386 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84278327 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 84278326 CCCACGGTGGGC 84278315 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 104254199 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 104254140 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 104254139 CCCACGGTGGGC 104254128 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 218586068 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 218586009 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 218586008 CCCACGGTGGGC 218585997 Score = 96.9 bits (106), Expect = 7e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG-TTCGAG 165768 ||||||||||||||||||||||||||| || || |||| || ||||||||||| |||||| Sbjct 156350762 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTCGAG 156350703 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 156350702 CCCCACGGTGGGC 156350690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 5/72 (7%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | |||| || |||||||||||||||||| Sbjct 197304888 GCCCGTCTAGCTCAGTTGGTAGAGCGC-----TCTTAACCTTGTGGTCGTGGGTTCGAGC 197304834 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 197304833 CCCACGGTGGGC 197304822 >seq7 Length=154015841 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 117072076 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 117072017 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 117072016 CCCACGGTGGGC 117072005 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 131030803 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 131030744 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 131030743 CCCACGGTGGGC 131030732 >seq11008 Length=369007 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| | || |||| || ||||||||||||||||| Sbjct 252993 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAACGCTCTTAACCTTGTGGTCGTGGGTTCGAG 252934 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 252933 CCCCACGGTGGGC 252921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057547660339070