Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 5e-13 seq3 86.0 6e-12 >seq2 Length=243061704 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || |||||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 119860899 AGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 119860958 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| ||||| ||||| | |||||| || || ||| || || ||||| || Sbjct 119860959 AGGCCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAA 119861017 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||| || ||||| || | || || |||| | ||| || ||| Sbjct 119861018 GAAGATGCCCTCGACGCAGGCGAACGCGACGAGTCGCTCGGCG 119861060 >seq3 Length=300915289 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || |||||||||||||| || || ||||| | | ||| || |||||||| || || Sbjct 250095906 AGGCAGGCGAAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 250095965 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | ||| ||||| || || ||||| | |||||| || || ||| || || ||||| || Sbjct 250095966 AGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAA 250096024 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 250096025 GAAGATGCCCTCGACGCAGGCGAAGGCGA 250096053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511284059647480