Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 113 7e-20 >seq3 Length=300915289 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || || || |||||| | ||| | || || | Sbjct 25197425 ATGCAGATATTTGTGAAGACCCTCACCGGGAAGACGATAACTCTTGAGGTGGAGAGTTCA 25197484 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || ||| ||||| ||||| || || || ||||||||||| Sbjct 25197485 -GACACCATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCA 25197543 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| |||| || | | ||| || || Sbjct 25197544 GCAGAGGCTCATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGGCAGACTACAA 25197603 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| | || |||||| | || | ||||| || || Sbjct 25197604 TATCCAGAAGGAGTCTACTCTTCACTTGGTTCTGCGCCTTCGAGGAGGAAT 25197654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755263462595200