Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 seq7 89.7 4e-13 >seq2 Length=243061704 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| |||||||||| ||| || | || || || ||||||||||| || || || || Sbjct 49653020 CCAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACAT 49652961 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 |||||| |||||||| ||||| |||||| ||| | || || || ||||||||||| || Sbjct 49652960 GGGACTTGGTGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATATATGATTGCTCA 49652901 Query 20550 TGTT 20553 ||| Sbjct 49652900 AGTT 49652897 >seq7 Length=154015841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| |||||||||| ||| || | || || || ||||||||||| || || || || Sbjct 4014136 CCAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACAT 4014077 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 |||||| |||||||| ||||| |||||| ||| | || || || || |||||||| || Sbjct 4014076 GGGACTTGGTGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGCTCA 4014017 Query 20550 TGTT 20553 ||| Sbjct 4014016 AGTT 4014013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399084806393605