Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq2 120 7e-22 >seq3 Length=300915289 Score = 129 bits (142), Expect = 1e-24 Identities = 305/451 (68%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 250095623 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 250095682 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||||||| |||||||| ||| | || ||||||| | ||| | Sbjct 250095683 CCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGTGCCCCAGCGCCATGAGCAGGCG 250095742 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 250095743 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGAC 250095802 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| |||| ||| | | ||| |||| || || || Sbjct 250095803 GGGGAGCG-CGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGATCTCGC 250095861 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | ||| || | ||| | | ||| | | ||||| ||| | | | || Sbjct 250095862 GGACACGGTCCTCGTCG-AGCTTGCTGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 250095919 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || || || || ||||| | || |||||| ||| | ||| | | ||| | | Sbjct 250095920 GCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCC--GGCATG 250095977 Query 157615 CTGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCC 157672 || |||||||| |||||| ||||||||||||| || || ||| | |||||| Sbjct 250095978 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 250096037 Query 157673 AGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| || | ||| |||| Sbjct 250096038 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGA 250096068 >seq2 Length=243061704 Score = 120 bits (132), Expect = 7e-22 Identities = 296/437 (68%), Gaps = 14/437 (3%) Strand=Plus/Plus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||| ||||| || || || | |||||||| ||||| |||||| Sbjct 119860632 TTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTG 119860691 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 ||| |||||||| ||||| | |||| || | ||| | ||| || || |||| | Sbjct 119860692 GCGGCGTTGTACATCTTGTTGCACCCTAGTGCCATGAGCAGGCGGTCGGCGACGAACTCG 119860751 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGCCGACG-A 157452 |||||||| ||||| | || | || |||| |||||||||||| |||| || || | Sbjct 119860752 ATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCGACGGGGAGCG-CGTCGCA 119860810 Query 157453 AATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATGAACTC-TCTCCCGCG 157511 | ||| |||| ||| | | || |||| || || || | || | | || Sbjct 119860811 GACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTCGCGGACGCGGGACTCGTC 119860870 Query 157512 GCAGCCTATTCTTGAGATGCTTGTAGATGA-GAACG-GAAGCCGTGGCGTGAAGTCCTTC 157569 | ||| | | ||| ||| ||||| || | ||| |||| | | ||| || || || Sbjct 119860871 G-AGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCACGCGAAGTC--GCAGTGCAGGCCCTC 119860927 Query 157570 GTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGAACTTCTGCCGCTTCTT 157626 ||| | || |||||| ||| | ||| | | || | ||| | || |||||||| Sbjct 119860928 GTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGC-CCT--CGCTTCTT 119860984 Query 157627 CAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCC 157686 |||||| ||||||||||||| || || ||| | |||||| | |||| ||| | Sbjct 119860985 GAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAACGC 119861044 Query 157687 GACTAGCCTCTCCGCGA 157703 ||| || | ||| |||| Sbjct 119861045 GACGAGTCGCTCGGCGA 119861061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073485895641152