Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq7 96.9 3e-15 seq4 91.5 1e-13 seq2 91.5 1e-13 seq8759 84.2 2e-11 >seq5 Length=158699395 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | ||| | ||| | |||||||||||| |||||||| || || Sbjct 71676474 TGGCCACCACGGAGGCGTAGAACAAGGTGGAGCGTAGACTCTTTCTGAATGTTGTAGTCT 71676533 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||| || ||||| ||||||||| ||||||| |||||||| || || Sbjct 71676534 GCCAAGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGGCGTTGCTGGTCCGGT 71676593 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | ||||| || ||||| ||| || || | | || | ||||| | | |||| Sbjct 71676594 GCGATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGACGACTCC 71676653 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| || |||| || || || || || ||||| Sbjct 71676654 ACCTCCAAGGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 71676703 Score = 100 bits (110), Expect = 3e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCT 139619 ||||| ||||||||||| |||||||| ||||| ||| | |||| || ||||||| Sbjct 71676956 GTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCT-AAGGTGCGGCCATCCTCGAGCT 71677014 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 | || |||||| |||| ||||| |||||||| || || ||||| || ||||| ||| | Sbjct 71677015 GCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC-TTGAATC 71677073 Query 139680 TTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || | || | | || | |||||| | | ||| ||||| | || | ||||| || Sbjct 71677074 TTCGCCTTCACATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCA 71677133 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || || || || ||||| Sbjct 71677134 GTCAAGGTCTTCACAAAGATCTGCAT 71677159 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCT 139619 ||||| ||||||||||| |||||||| || || ||| | |||| || ||||||| Sbjct 71681789 GTGAAGGGTAGACTCTTTCTGAATGTTGTAGTCAGCT-AAGGTGCGGCCATCCTCGAGCT 71681847 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 | || |||||| |||| ||||| |||||||| || || ||||| || ||||| ||| | Sbjct 71681848 GCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC-TTGAATC 71681906 Query 139680 TTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || | || | | || | |||||| | | ||| ||||| | || | ||||| || Sbjct 71681907 TTCGCCTTCACATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCA 71681966 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || || || || ||||| Sbjct 71681967 GTCAAGGTCTTCACAAAAATCTGCAT 71681992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || ||||||||||| || Sbjct 71676704 GCCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGC 71676763 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || ||||| || ||||| |||| || || ||||| || || || Sbjct 71676764 AAGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 71676823 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| | |||| ||| | | || | |||||||| | ||| | Sbjct 71676824 GATGCCTTCCTTGTC-CTGAATCTTTGCTTTCACATTATCAATTGTGTCGGAAGACTCAA 71676882 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || |||| || || ||||| |||||||| Sbjct 71676883 CTTCAAGTGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAGATTTGCAT 71676931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || ||||||||||| || Sbjct 71681537 GCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGC 71681596 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || ||||| || ||||| |||| || || ||||| || || || Sbjct 71681597 AAGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 71681656 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | |||| ||| | | || | |||||| | | ||| | Sbjct 71681657 GATGCCTTCTTTGTC-TTGAATCTTTGCTTTCACATTATCAATTGTGTCAGAAGACTCAA 71681715 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || |||| || || ||||| |||||||| Sbjct 71681716 CTTCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATTTGCAT 71681764 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| ||||| || || || ||| | |||| || || ||||| Sbjct 74943991 GTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTG 74943932 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| ||||| ||||| || || || ||||| || ||||| ||| || Sbjct 74943931 CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 74943872 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || ||| ||||||| || | ||||||||||| Sbjct 74943871 GGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACCTCAAGTGTGATGGTCTTGCCGGT 74943812 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | || || || || || |||||| Sbjct 74943811 GAGGGTCTTCACAAAGATCTGCATA 74943787 >seq7 Length=154015841 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || | ||||| || ||||| ||||| ||||| ||||| Sbjct 60356399 GCCACCTCGCAGACGAAGCACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGC 60356458 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || | ||| || |||||| |||| ||||| ||||| || ||||| Sbjct 60356459 AAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 60356518 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | || |||||| Sbjct 60356519 AATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCCGAGGACTCCAC 60356578 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || || || || ||||| Sbjct 60356579 CTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 60356626 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || | ||| | |||||||| || || ||||| || || Sbjct 60356169 TGGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCC 60356228 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || || ||||| || |||||| |||| ||||| ||||| || || Sbjct 60356229 GCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGG 60356288 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | |||||| | || ||| Sbjct 60356289 GGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCAATTGTGTCTGAGGACTC 60356347 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||| | |||||||| || | || || || || || ||||| Sbjct 60356348 CACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 60356398 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || || | |||| || ||| Sbjct 60356874 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCATCCTCG 60356933 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| || | ||||| || || || |||||||| ||||| | Sbjct 60356934 AGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 60356993 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | |||||| | || ||| ||||| | ||| | |||||| Sbjct 60356994 ATCTTAGCTTTGACGTTGTCAATTGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTG 60357053 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || ||||| || ||||| Sbjct 60357054 CCGGTGAGGGTCTTAACGAAGATCTGCAT 60357082 >seq4 Length=191835039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| ||||||||||| ||||| Sbjct 68254232 GCCTCCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTTTGAATGTTGTAATCTGC 68254173 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | | || || ||||| || |||||| |||| || || ||||| || ||||| Sbjct 68254172 AAGCGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGG 68254113 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| ||| || | | || | || || | | |||||| Sbjct 68254112 AATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATCGTATCAGAAGACTCCAC 68254053 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||||||||| | || || || || || ||||| Sbjct 68254052 CTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 68254005 >seq2 Length=243061704 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || | ||| | || ||||| || || || || ||||| Sbjct 233057481 TGACCACCACGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCA 233057422 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || || ||||| ||||| ||| |||||||||| ||||||||||| Sbjct 233057421 GCCAGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCGGGG 233057362 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | |||||| | | ||| Sbjct 233057361 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAGCTCTCA 233057302 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | |||||||| ||||| || || || || || ||||| Sbjct 233057301 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 233057252 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||||||||| | |||| ||| || ||||| || ||||| | Sbjct 233057215 CTCCTTCTGAATGTTATAATCAGCAAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 233057156 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||||||| ||||| || || || ||||| || ||||| ||| || || | | Sbjct 233057155 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 233057096 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | | ||| ||||| | || | |||||||| ||||| || || || Sbjct 233057095 GTCGATGGTGTCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 233057036 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 233057035 GAAGATCTGCAT 233057024 >seq8759 Length=1216561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 153455 ATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGC 153514 ||||||||| ||||||| ||| ||||| || || | || |||||||| ||| | ||||| Sbjct 960069 ATCGGCCAAGCCTTGAACGCCTATGCCAATTGGCCTGTGACGCATATTTGATCTCTTTGC 960010 Query 153515 AGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATT 153553 || |||||||||||| |||| || |||||||| || Sbjct 960009 AGTCTCAACAGGATAGTAATTAATATCAATAATTTTGTT 959971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495937571888800