Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 196 7e-45 seq3 178 2e-39 >seq2 Length=243061704 Score = 196 bits (216), Expect = 7e-45 Identities = 564/847 (67%), Gaps = 32/847 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| ||| ||||| ||||||| ||||||||| || ||| Sbjct 119861455 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAAGAGGTGGACCTG 119861396 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||| ||| | | ||||| || || | | || ||||| | || || || Sbjct 119861395 TCCGCCGACGCCCGCCACTGGGACGAGTCCCTCTCCCCTGAC-GAGCGCCACTTCATCTC 119861337 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | |||||||||| |||| |||||| || ||||| ||| || || | | || Sbjct 119861336 CCACGTCCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCGCG 119861277 Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || || || | | |||| || || || ||||| ||||| ||| Sbjct 119861276 CTTCATGTCC-GACGTGCAGGTCGCCGAGGCC-CGCGCCTTCTACGGCTTCCAGATCGCC 119861219 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | |||||||| |||||||| ||| | || | ||||| ||||| | | Sbjct 119861218 ATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACTTACATCCGCGA-CGG 119861160 Query 125316 CAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | || || || || || ||| |||||||| || || | | || ||||| Sbjct 119861159 CGCCGAGAAGGACCGCCTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGC 119861100 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACTGGTGG 125433 | |||| || ||||||||||| | || || ||||| |||| |||| || | Sbjct 119861099 GGACTGGGCCATGCGGTGGATCGACGGCGGGGAGCGCTTCG----CCGAGCGACTCGTCG 119861044 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTC 125492 | |||||| ||| |||||||||||||| ||||| | || |||| ||||||| |||||| Sbjct 119861043 CGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTC 119860985 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || |||||||| || || || | |||||| | || || || |||||| Sbjct 119860984 AAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 119860925 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612 ||||| ||||| ||||| || || || | || | || | ||| || || Sbjct 119860924 GGCCTGCACTGCGACTTCGCGTGCCTCCT------CTACGAGCT-CCTCCGCAG-CAAGC 119860873 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 || | ||| ||| | | || || |||| |||||| || || | ||||| Sbjct 119860872 TCGA-CGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTGGACATCGAGCGCGAGTTC 119860814 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | ||| | || || ||| | | ||||||||| || ||| ||| |||||||| Sbjct 119860813 GTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCGCTCATGAGCGAGTAC 119860754 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACT----GTACGAGTTGATTGGCCGCAAGATTTACAA 125788 || ||||| || || || || || || | || || | | || |||||| ||||| Sbjct 119860753 ATCGAGTTCGTCGCCGACCGCCTGCTCATGGCACTAG--GGT--GCAACAAGATGTACAA 119860698 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 |||| || ||||| || | ||| ||| || || |||| ||||||||||| || Sbjct 119860697 CGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTT 119860638 Query 125849 CGAGAAG 125855 ||||||| Sbjct 119860637 CGAGAAG 119860631 >seq3 Length=300915289 Score = 178 bits (196), Expect = 2e-39 Identities = 586/890 (66%), Gaps = 36/890 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || ||| |||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 250096488 CCATGTTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 250096429 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||||| ||| ||||| || || ||| ||| | | | ||||| | || Sbjct 250096428 TCTGGACGGCCGAGGAGGTTGACCTCTCCGCCGACGCGCGCCACTGGGA--CGCGGCGCT 250096371 Query 125113 CTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || ||| ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 250096370 CTCCAACGACGAGCGCCACTTCATCTCTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGG 250096311 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGT 125227 ||||| ||| || || | || ||| | || || ||| || | |||| Sbjct 250096310 CATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCCGACGT---CCAGGTCGCCGAGGC 250096254 Query 125228 GTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTA 125286 | || || || ||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 250096253 G-CGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGC 250096195 Query 125287 CACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATC 125345 ||| | || | |||||| |||||| || || || || ||||| ||| || Sbjct 250096194 TGCTGCTCGAGACGTACATCCGCGATG-GCGCCGAGAAGGACCGCCTCTTCCGCGCCGTC 250096136 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 ||||| | || | | || ||||| | |||| || || |||||||| | || Sbjct 250096135 GACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGG 250096076 Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 || ||||| |||| | || || || |||||| ||| |||||||||||||| || Sbjct 250096075 GAGCGCTTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTC 250096020 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || |||| ||||||| ||||||||||||||||| |||||||| || || || Sbjct 250096019 GGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCT 250095961 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || || || ||||||||||| || || ||||| ||| || || Sbjct 250095960 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCT-- 250095903 Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643 | || | || | ||| || || || | ||| || ||| | | || || Sbjct 250095902 ----CTACGACCT-CCTCCGCAG-CAAGCTCGA-CGAGGACCGTGTCCGCGAGATCGTCG 250095850 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703 |||| ||||| || || | ||||| | ||| | || || ||| | | | Sbjct 250095849 CCGACGCCGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCG 250095790 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 |||||||| || ||| ||| || ||||||| ||||| || || || || || || | Sbjct 250095789 GCATGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CA 250095733 Query 125764 AGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | | | || | | ||||| ||||||| | || || || || | ||| || Sbjct 250095732 TGGCGCTGGGGCACAAGAAGATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCA 250095673 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || |||| ||||||||||| ||||||||| ||| | |||||| Sbjct 250095672 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTAC 250095623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740870331799640