Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq2 86.0 5e-12 seq5 82.4 6e-11 seq4 82.4 6e-11 >seq7 Length=154015841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || ||||| ||||||| || | | ||||| Sbjct 60356189 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 60356248 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 60356249 CAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 60356308 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | | | || || | |||| || | ||||||||| || Sbjct 60356309 AATCTTCGCCTTGACATTGTCAATTGTGTCTGAGGACTCCACCTCAAGGGTAATGGTCTT 60356368 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || |||||||| ||||| Sbjct 60356369 GCCAGTGAGGGTCTTCACAAAAATCTGCAT 60356398 >seq2 Length=243061704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || ||||||||||| |||| || | | ||||| Sbjct 233057461 CACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGGCCATCCTC 233057402 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||||| ||||| ||| | || || | ||||||||| ||| | |||||| ||||| Sbjct 233057401 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 233057345 >seq5 Length=158699395 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| || |||| || | | ||||| Sbjct 81635951 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 81635892 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| || ||| | |||||| ||||| Sbjct 81635891 CAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 81635832 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || ||| | |||| |||| ||||||||| || Sbjct 81635831 GATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTAATGGTCTT 81635772 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 81635771 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 81635742 >seq4 Length=191835039 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| ||||| |||||||| |||| || | ||||||||||| || || Sbjct 68254885 GTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTCCGCCCATCCTCCAGCTGCTTGCCG 68254826 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || | |||||| ||| ||| | |||||| ||||| ||| ||| || Sbjct 68254825 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 68254766 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || || || |||| || | || ||||| || || || | || Sbjct 68254765 ACATTGTCAATCGTGTCTGAAGACTCCACCTCCAAAGTGATGGTCTTGCCGGTGAGCGTC 68254706 Query 19025 TTGACAAAAATTTGCATT 19042 ||||||||||| |||||| Sbjct 68254705 TTGACAAAAATCTGCATT 68254688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469782416266