Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3 82.4 5e-11
>seq3
Length=300915289
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | || |||||||| || ||||||||||||| ||| || || ||| |||
Sbjct 25197861 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAATGTGCGTCCGTCCTCC 25197802
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277
||||||||| ||| || | || |||||||| | || ||||| ||||| || |
Sbjct 25197801 GGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGG 25197742
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| | ||| || || | | ||| ||||| | | ||| |||||||| || ||
Sbjct 25197741 ATCTTTGCC---TTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAGAGTGATAGTC 25197685
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| | ||||| || || || || || |||||
Sbjct 25197684 TTCCTAGTAAGTGTCTTCACAAAGATATGCAT 25197653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318698386655322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |