Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=300915289 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || |||||||| || ||||||||||||| ||| || || ||| ||| Sbjct 25197861 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAATGTGCGTCCGTCCTCC 25197802 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 ||||||||| ||| || | || |||||||| | || ||||| ||||| || | Sbjct 25197801 GGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGG 25197742 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | ||| ||||| | | ||| |||||||| || || Sbjct 25197741 ATCTTTGCC---TTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAGAGTGATAGTC 25197685 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||||| || || || || || ||||| Sbjct 25197684 TTCCTAGTAAGTGTCTTCACAAAGATATGCAT 25197653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318698386655322