Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=243061704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| || || || || |||| | | || |||| ||| | | |||||| Sbjct 23559855 ACGCCGGTGGATCCAAACCCTCCCTCGCCGCGCACGGTGGCGTCGAGGTCCTCAACCTCT 23559914 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | || || || ||| |||| |||| |||||| || ||||| || | ||| Sbjct 23559915 GCGACCTCCGGCGTCGCGATAACCTCGATAATCATCTGCGCGATCCGGTCCCCAGGCTTG 23559974 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 || | || || | |||| |||||| || | || |||||| ||||||||||| Sbjct 23559975 ACGGCAAAGTCCACAT--CCGAGTGGTTGAAGAGGATGACACCCACGGGGCCGCGGTAGT 23560032 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 | ||||| |||||||| ||||| ||||||||| ||||||| | ||| || || || Sbjct 23560033 CAGCGTCGATCACGCCAGCGCCAACGTCGATGGAGTGCTTCAGCGCAAGCCCCGA 23560087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429947535378968