Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 5e-19
seq2 109 5e-19
seq4 105 6e-18
seq7 95.1 1e-14
>seq5
Length=158699395
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| ||||| |||||| ||||||||||| || || || || ||||||| ||||||
Sbjct 71681334 TGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCTAAGGTACGACCGTCCTCAAGCTGC 71681393
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| | | || || |||||||| ||| ||| | || |||||||||| || |||
Sbjct 71681394 TTACCAGCAAAGATCAACCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGGATCTTC 71681453
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | ||||| || | ||||| ||| | || ||||| || || |||
Sbjct 71681454 GCCTTCACATTGTCAATGGTGTCCGACGACTCGACCTCCAGGGTGATGGTCTTTCCAGTG 71681513
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
||||| |||||||| ||||||||
Sbjct 71681514 AGAGTCTTCACAAAGATCTGCAT 71681536
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || ||||| ||| |||||| || |||||||| || |||| || | |||||
Sbjct 81635951 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 81635892
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| | | || | |||||||| || || | | |||||||||
Sbjct 81635891 CAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 81635832
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| ||| ||| | | ||||| |||| |||||| ||||| || ||||| ||
Sbjct 81635831 GATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTAATGGTCTT 81635772
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || || || || ||||||||
Sbjct 81635771 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 81635742
>seq2
Length=243061704
Score = 109 bits (120), Expect = 5e-19
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||||||||||| || |||||||||||||| | ||| ||||||| ||||||
Sbjct 233056770 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCGAGCGTACGCCCGTCCTCGAGCTGC 233056711
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || | || | | |||||| ||| || | | ||||||||| || ||
Sbjct 233056710 TTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 233056651
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||||| | | || ||||| || | ||||| ||||| || ||||| || ||||
Sbjct 233056650 GCCTTGACGTTGTCG--ATGGTGTCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGG 233056593
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
|||| || ||||||||||||||||||
Sbjct 233056592 TGAGGGTCTTCACAAAAATCTGCATC 233056567
Score = 102 bits (112), Expect = 7e-17
Identities = 149/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||||||||||| || ||||||||||| || || || || |||||||||||||
Sbjct 229073559 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGC-AAGGGTGCGACCGTCCTCCAGCTG 229073501
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| | | || | | |||||| ||| || | | ||||||||| || ||
Sbjct 229073500 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 229073441
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || ||||| |||| ||||||| ||| | || ||||| || ||
Sbjct 229073440 GGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTGCCA 229073383
Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || ||||||||
Sbjct 229073382 GTGAGGGTCTTCACGAAGATCTGCAT 229073357
Score = 100 bits (110), Expect = 2e-16
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||||||||||| || ||||||||||||| ||| || || ||||||| |||||
Sbjct 229073331 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAG-CAAGGGTACGGCCGTCCTCGAGCTG 229073273
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| | | || | | |||||| ||| || | | ||||||||| || ||
Sbjct 229073272 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 229073213
Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
|||| | | | || || |||| ||||||| ||||| || ||||| || || |
Sbjct 229073212 -GGCTTTCACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAG 229073154
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
|||| || |||||||| |||||||||
Sbjct 229073153 TGAGGGTCTTCACAAAGATCTGCATC 229073128
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||||||||||| || |||||||||||||| | ||| ||||||| ||||||
Sbjct 233056998 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCGAGCGTACGCCCGTCCTCGAGCTGC 233056939
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || | || | | |||||| ||| || | | ||||||||| || ||
Sbjct 233056938 TTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 233056879
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| || | |||||| ||| | || ||||| || ||||||
Sbjct 233056878 GCCTTGACATTGTCGATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTG 233056819
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| || ||||||||
Sbjct 233056818 AGGGTCTTCACGAAGATCTGCAT 233056796
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
|| || ||||||||||| |||||||| |||||||| | | || || |||||||||||||
Sbjct 233057226 TGCAGGGTGCTCTCCTTCTGAATGTTATAATCAGCAAGAGTGCGGC-CGTCCTCCAGCTG 233057168
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || || | || | ||||||||| ||| || | | ||||||||| || ||
Sbjct 233057167 CTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 233057108
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | ||||| || | ||| ||| | || ||||| || || ||
Sbjct 233057107 GGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGT 233057048
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
| || ||||| || |||||||||
Sbjct 233057047 CAAGGTCTTCACGAAGATCTGCATC 233057023
>seq4
Length=191835039
Score = 105 bits (116), Expect = 6e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||| ||||||||||||||||||||| | ||| || ||| | ||||| |||||
Sbjct 68254207 TGCAGGGTGGACTCCTTTTGAATGTTGTAATCTG-CAAGCGTACGCCCATCCTCAAGCTG 68254149
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | | || | |||||||| || || | | |||||||||| || ||
Sbjct 68254148 CTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTT 68254089
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | || ||||| | ||||||| ||| | || ||||| || |||||
Sbjct 68254088 TGCCTTGACATTGTCAATCGTATCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 68254029
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
||| || |||||||| |||||||||
Sbjct 68254028 GAGTGTCTTCACAAAGATCTGCATC 68254004
Score = 105 bits (116), Expect = 6e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| |||||||||||||| |||| ||| | |||||||||||||| ||| | |
Sbjct 68254879 TCCTTCTGAATGTTGTAATCTGCCAGGGTCCGCCCATCCTCCAGCTGCTTGCCGGCAAAG 68254820
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| | |||||||| ||| || | | ||||||||| ||| ||| ||| | |
Sbjct 68254819 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTG 68254760
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
| || || || | ||||||| ||| | || ||||| || |||||||| || || |||
Sbjct 68254759 TCAATCGTGTCTGAAGACTCCACCTCCAAAGTGATGGTCTTGCCGGTGAGCGTCTTGACA 68254700
Query 48716 AAAATCTGCAT 48726
|||||||||||
Sbjct 68254699 AAAATCTGCAT 68254689
>seq7
Length=154015841
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || |||| || | |||||||||||||| || | |
Sbjct 60356207 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 60356266
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | ||||||||| ||| || | | ||||||||| ||| ||| ||||| |
Sbjct 60356267 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATT 60356326
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || || || | |||||| ||| | || ||||| || || ||||| || |||||
Sbjct 60356327 GTCAATTGTGTCTGAGGACTCCACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCAC 60356386
Query 48715 AAAAATCTGCAT 48726
||||||||||||
Sbjct 60356387 AAAAATCTGCAT 60356398
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| ||| ||||||||| ||||||||||||| ||| || || | ||||||| |||
Sbjct 60356424 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAG-CAAGGGTGCGGCCATCCTCCAACTG 60356482
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | | || | ||||||||| || || | | ||||||||| || ||
Sbjct 60356483 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 60356542
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | || || || | |||||| ||| | || ||||| || |||||
Sbjct 60356543 AGCCTTCACATTGTCAATTGTGTCCGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGT 60356602
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
||| || || ||||| |||||||||
Sbjct 60356603 GAGGGTCTTGACAAAGATCTGCATC 60356627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421146522894389
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