Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq2 109 5e-19 seq4 105 6e-18 seq7 95.1 1e-14 >seq5 Length=158699395 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| ||||||||||| || || || || ||||||| |||||| Sbjct 71681334 TGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCTAAGGTACGACCGTCCTCAAGCTGC 71681393 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | | || || |||||||| ||| ||| | || |||||||||| || ||| Sbjct 71681394 TTACCAGCAAAGATCAACCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGGATCTTC 71681453 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||| | || ||||| || || ||| Sbjct 71681454 GCCTTCACATTGTCAATGGTGTCCGACGACTCGACCTCCAGGGTGATGGTCTTTCCAGTG 71681513 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| |||||||| |||||||| Sbjct 71681514 AGAGTCTTCACAAAGATCTGCAT 71681536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || |||||||| || |||| || | ||||| Sbjct 81635951 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 81635892 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| | | || | |||||||| || || | | ||||||||| Sbjct 81635891 CAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 81635832 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | ||||| |||| |||||| ||||| || ||||| || Sbjct 81635831 GATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTAATGGTCTT 81635772 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || |||||||| Sbjct 81635771 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 81635742 >seq2 Length=243061704 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || |||||||||||||| | ||| ||||||| |||||| Sbjct 233056770 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCGAGCGTACGCCCGTCCTCGAGCTGC 233056711 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | | |||||| ||| || | | ||||||||| || || Sbjct 233056710 TTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 233056651 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | ||||| ||||| || ||||| || |||| Sbjct 233056650 GCCTTGACGTTGTCG--ATGGTGTCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGG 233056593 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || |||||||||||||||||| Sbjct 233056592 TGAGGGTCTTCACAAAAATCTGCATC 233056567 Score = 102 bits (112), Expect = 7e-17 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || ||||||||||| || || || || ||||||||||||| Sbjct 229073559 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGC-AAGGGTGCGACCGTCCTCCAGCTG 229073501 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | | |||||| ||| || | | ||||||||| || || Sbjct 229073500 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 229073441 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| ||||||| ||| | || ||||| || || Sbjct 229073440 GGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTGCCA 229073383 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || |||||||| Sbjct 229073382 GTGAGGGTCTTCACGAAGATCTGCAT 229073357 Score = 100 bits (110), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || ||||||||||||| ||| || || ||||||| ||||| Sbjct 229073331 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAG-CAAGGGTACGGCCGTCCTCGAGCTG 229073273 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | | |||||| ||| || | | ||||||||| || || Sbjct 229073272 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 229073213 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | | || || |||| ||||||| ||||| || ||||| || || | Sbjct 229073212 -GGCTTTCACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAG 229073154 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || |||||||| ||||||||| Sbjct 229073153 TGAGGGTCTTCACAAAGATCTGCATC 229073128 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || |||||||||||||| | ||| ||||||| |||||| Sbjct 233056998 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCGAGCGTACGCCCGTCCTCGAGCTGC 233056939 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | | |||||| ||| || | | ||||||||| || || Sbjct 233056938 TTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 233056879 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||| | || ||||| || |||||| Sbjct 233056878 GCCTTGACATTGTCGATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTG 233056819 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 233056818 AGGGTCTTCACGAAGATCTGCAT 233056796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||||||||||| |||||||| |||||||| | | || || ||||||||||||| Sbjct 233057226 TGCAGGGTGCTCTCCTTCTGAATGTTATAATCAGCAAGAGTGCGGC-CGTCCTCCAGCTG 233057168 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 233057167 CTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 233057108 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||| ||| | || ||||| || || || Sbjct 233057107 GGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGT 233057048 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || ||||||||| Sbjct 233057047 CAAGGTCTTCACGAAGATCTGCATC 233057023 >seq4 Length=191835039 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| ||||||||||||||||||||| | ||| || ||| | ||||| ||||| Sbjct 68254207 TGCAGGGTGGACTCCTTTTGAATGTTGTAATCTG-CAAGCGTACGCCCATCCTCAAGCTG 68254149 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | |||||||| || || | | |||||||||| || || Sbjct 68254148 CTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTT 68254089 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || ||||| | ||||||| ||| | || ||||| || ||||| Sbjct 68254088 TGCCTTGACATTGTCAATCGTATCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 68254029 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 68254028 GAGTGTCTTCACAAAGATCTGCATC 68254004 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| |||||||||||||| |||| ||| | |||||||||||||| ||| | | Sbjct 68254879 TCCTTCTGAATGTTGTAATCTGCCAGGGTCCGCCCATCCTCCAGCTGCTTGCCGGCAAAG 68254820 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| ||| || | | ||||||||| ||| ||| ||| | | Sbjct 68254819 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTG 68254760 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | ||||||| ||| | || ||||| || |||||||| || || ||| Sbjct 68254759 TCAATCGTGTCTGAAGACTCCACCTCCAAAGTGATGGTCTTGCCGGTGAGCGTCTTGACA 68254700 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 68254699 AAAATCTGCAT 68254689 >seq7 Length=154015841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || | |||||||||||||| || | | Sbjct 60356207 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 60356266 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | | ||||||||| ||| ||| ||||| | Sbjct 60356267 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATT 60356326 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | |||||| ||| | || ||||| || || ||||| || ||||| Sbjct 60356327 GTCAATTGTGTCTGAGGACTCCACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCAC 60356386 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 60356387 AAAAATCTGCAT 60356398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| ||||||||| ||||||||||||| ||| || || | ||||||| ||| Sbjct 60356424 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAG-CAAGGGTGCGGCCATCCTCCAACTG 60356482 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||||||| || || | | ||||||||| || || Sbjct 60356483 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 60356542 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || || | |||||| ||| | || ||||| || ||||| Sbjct 60356543 AGCCTTCACATTGTCAATTGTGTCCGAGGACTCCACCTCCAGAGTGATGGTCTTGCCGGT 60356602 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || ||||| ||||||||| Sbjct 60356603 GAGGGTCTTGACAAAGATCTGCATC 60356627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421146522894389