Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6 113 2e-20 seq5 111 8e-20 seq3 111 8e-20 seq12128 109 3e-19 seq2 109 3e-19 seq7 107 1e-18 seq4 107 1e-18 seq1 107 1e-18 >seq6 Length=240577051 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||||||||| || |||||||||| | | |||||||| ||||||||| Sbjct 21620340 ATAGAA--AATAAAAAACTAAGAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 21620397 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| ||||||||||||||| |||||| Sbjct 21620398 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCGT 21620440 Score = 109 bits (120), Expect = 3e-19 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 23363837 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 23363896 Query 11512 CAACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTC 11549 ||||||||||||||||||| || |||| || | |||| Sbjct 23363897 CAACTGAGCTAATGGGCCG--GATGATTATGTTGTTTC 23363932 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 200622081 AAAAAATGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 200622024 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 200622023 GCTCTAACCAACTGAGCTAATAGGCC 200621998 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 43167069 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 43167128 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 43167129 TGAGCTAATAGGCC 43167142 >seq5 Length=158699395 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 120675237 TAAAAAA--AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 120675180 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 120675179 CGCTCTAACCAACTGAGCTAATAGGCC 120675153 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 120778347 AAATAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 120778288 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 120778287 GCTCTAACCAACTGAGCTAATAGGCC 120778262 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||| | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 148983010 TTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 148982951 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 148982950 CTGAGCTAATAGGCCG 148982935 >seq3 Length=300915289 Score = 111 bits (122), Expect = 8e-20 Identities = 82/96 (85%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| |||||| ||| |||||||||| | | |||||||| |||||||||||||| Sbjct 251998850 ATTAAGCAAAAATAAAAATGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 251998909 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 251998910 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 251998945 Score = 109 bits (120), Expect = 3e-19 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| ||| ||||||| || |||||||| | | |||||||| |||||||||||||| Sbjct 238388544 TAGAGGTAACAAAAAATTGGAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 238388486 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 238388485 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 238388450 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || || |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 58496686 AAAAACAGAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 58496744 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 58496745 TCTAACCAACTGAGCTAATAGGCC 58496768 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | |||||||||| | | |||||||| |||| |||||||||||||||| Sbjct 251999003 AACAAAAAAACGA-TTGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCAC 251999061 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 251999062 GACGCTCTAACCAACTGAGCTAATAGGCC 251999090 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 254014174 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 254014233 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 254014234 TGAGCTAATAGGCC 254014247 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 58121868 TTGGCCCATGCAGGTCTCGAACCG-CGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 58121926 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 58121927 CTGAGCTAATAGGCC 58121941 >seq12128 Length=298295 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| || ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 231191 AAGAAAAAGTCGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 231133 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 231132 GACGCTCTAACCAACTGAGCTAATAGGCC 231104 >seq2 Length=243061704 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| || ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 17591992 AAAAAAAATTCGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 17592050 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 17592051 GACGCTCTAACCAACTGAGCTAATAGGCC 17592079 >seq7 Length=154015841 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 6859979 TAAAAAACCA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 6860035 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 6860036 CGCTCTAACCAACTGAGCTAATAGGCC 6860062 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||| |||||| | | |||||||| |||||||||||||||||||||||| Sbjct 143570713 AAAAAACTAAGTTGCCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 143570772 Query 11504 GCTCTRACCAACTGAGCTAAT-GGGCCGT 11531 ||||| ||||||||||||||| |||| || Sbjct 143570773 GCTCTAACCAACTGAGCTAATAGGGCTGT 143570801 >seq4 Length=191835039 Score = 107 bits (118), Expect = 1e-18 Identities = 77/88 (88%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 149459545 TAAAAAAACAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 149459486 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||| |||| |||| Sbjct 149459485 ACGCTCTAACCAACTGAGGTAATAGGCC 149459458 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||| ||||| | | |||||| | |||||| | ||||||||||||||| Sbjct 162822631 AAAAATTCA---TGGGCCATGCAGGTCTCGAACTTGCGACCTCCACGTTATTAGCACGAC 162822575 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 162822574 GCTCTAACCAACTGAGCTAATAGGCCG 162822548 >seq1 Length=275477322 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 76150846 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 76150905 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 76150906 ACTGAGCTAATAGGCC 76150921 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 76649728 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 76649669 Query 11511 CCAACTGAGCTAATGGGCCGTCGACGA 11537 |||||||||||||| |||| | || || Sbjct 76649668 CCAACTGAGCTAATAGGCCATTGATGA 76649642 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||| | | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 184941292 TACAAAAAGATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 184941351 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 184941352 CGCTCTAACCAACTGAGCTAATAGGCC 184941378 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261426221806564