Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 132 8e-27 seq5 131 3e-26 seq1 129 9e-26 seq6444 123 4e-24 seq21 123 4e-24 seq6 120 5e-23 seq7 118 2e-22 >seq3 Length=300915289 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 282367402 CGCCAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 282367343 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 282367342 CCGGAGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 282367283 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 282367282 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 282367223 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 282367222 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 282367163 Query 16672 CCG 16674 ||| Sbjct 282367162 CCG 282367160 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 293256506 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 293256565 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 293256566 CCGGAGGCTGGCCAGGAGGGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 293256625 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 293256626 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 293256685 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 293256686 GCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 293256745 Query 16672 CCG 16674 ||| Sbjct 293256746 CCG 293256748 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 294689910 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 294689851 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 294689850 CCGGAGGCTGGCCAGGAGGGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 294689791 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 294689790 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 294689731 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 294689730 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 294689671 Query 16672 CCG 16674 ||| Sbjct 294689670 CCG 294689668 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | | ||||| | | || Sbjct 27278891 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCAGGAGGCTGGCGAGGAGGGGC 27278950 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 27278951 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 27279010 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 27279011 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 27279070 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 27279071 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 27279111 >seq5 Length=158699395 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 156173911 CGCCAAGCGGCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 156173853 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| || | || || |||||||| |||| || | |||| || |||| Sbjct 156173852 TCCGGAGGCTGGCGCGCAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 156173793 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| || | Sbjct 156173792 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGG 156173733 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 156173732 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 156173673 Query 16671 GCCG 16674 |||| Sbjct 156173672 GCCG 156173669 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 108509972 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 108510031 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 108510032 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 108510091 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 108510092 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 108510151 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 108510152 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 108510192 Score = 111 bits (122), Expect = 2e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 106968972 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGAGACTGGCGAGGAGGGGC 106969031 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 106969032 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 106969091 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 106969092 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 106969151 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 106969152 ACCGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGGCCG 106969192 >seq1 Length=275477322 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | || || || |||||||| || ||||||||||| || || Sbjct 200751520 CGCCAAGCGCCATCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 200751579 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 200751580 CCGGCGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 200751639 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 200751640 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 200751699 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 200751700 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 200751759 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 200751760 CCGCACCCTCTACGGTTTCGG 200751780 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 116915142 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGCAGGCTGGCGAGGAGGGGC 116915083 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 116915082 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 116915023 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 116915022 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 116914963 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 116914962 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 116914922 >seq6444 Length=577501 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| |||||||||||||| || ||||| | ||||| | | || Sbjct 263522 CTCCGCGACAACATCCAGGGAATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGC 263581 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 263582 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 263641 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| | || ||||| ||| Sbjct 263642 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGCGCAAGACCGTC 263701 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || | || ||||| Sbjct 263702 ACCGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 263742 >seq21 Length=1318887 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | || || || |||||||| || ||||||||||| || || Sbjct 1090165 CGCCAAGCGCCATCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 1090106 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 1090105 CCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1090046 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 1090045 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 1089986 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| |||||| ||||||| ||||||| || | || | || || Sbjct 1089985 GCACGCCAGGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGG 1089926 Query 16672 CCG 16674 ||| Sbjct 1089925 CCG 1089923 >seq6 Length=240577051 Score = 120 bits (132), Expect = 5e-23 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 |||||||| |||| | || || || || |||||||| || ||||| ||||| || ||||| Sbjct 35331925 AAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCG 35331867 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 | ||||| | | || || || ||||| |||| || | |||| || |||| || Sbjct 35331866 GAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCG 35331807 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | || | |||||||||||| ||| ||| |||| || || || ||| || ||||| Sbjct 35331806 CGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCA 35331747 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || ||||| |||||| ||||||| ||||||| || | || || || ||||| Sbjct 35331746 CGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 35331687 >seq7 Length=154015841 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||| ||||| || || Sbjct 41327299 CGCCAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGAT 41327358 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 41327359 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 41327418 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| ||||| || || || || Sbjct 41327419 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGATGCCGTCACTTACACGGA 41327478 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 41327479 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 41327538 Query 16672 CCG 16674 ||| Sbjct 41327539 CCG 41327541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056558194577