Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 125 6e-24 seq4 120 3e-22 seq7 113 4e-20 seq2 105 6e-18 seq3 100 2e-16 seq4399 84.2 2e-11 >seq5 Length=158699395 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || |||||||||||| Sbjct 74944244 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTGGAGTCGTCT 74944303 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || ||||| || ||| ||||| || || || || || ||||| Sbjct 74944304 GACACCATCGA-TAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 74944362 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || |||| ||||| ||| || ||||| Sbjct 74944363 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAA 74944422 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || | ||||| Sbjct 74944423 CATTCAGAAGGAATCCACTCTCCACCTGGTGCT 74944455 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| |||| || || |||||||| | ||||| ||||| ||| Sbjct 71681764 ATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACCATCACACTTGAAGTTGAGTCTTCT 71681705 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| ||||| | ||| ||||||||||| || ||||| ||||| Sbjct 71681704 GACACAATTGATAATGTGAAAGCAAAGATTCAA-GACAAAGAAGGCATCCCACCAGACCA 71681646 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | || |||| || ||| | | || || || Sbjct 71681645 GCAGCGCCTCATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGGACTCTTGCTGACTATAA 71681586 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || ||||| Sbjct 71681585 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCT 71681553 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || || ||||||| | || ||||||||||| Sbjct 71676703 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACCATCACCTTGGAGGTGGAGTCGTCA 71676644 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || || |||| ||||| Sbjct 71676643 GACACCATTGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCGCACCGGACCAG 71676584 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || | || || | ||||| ||| || ||||| Sbjct 71676583 CAACGCCTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCTTGGCAGACTACAAC 71676524 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| || ||||| || Sbjct 71676523 ATTCAGAAAGAGTCTACGCTCCA 71676501 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||| || |||| |||||||| || Sbjct 81635742 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTGGAGTCCTCC 81635801 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || || || || ||||| Sbjct 81635802 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 81635861 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| ||| || ||||| Sbjct 81635862 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 81635921 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 81635922 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCT 81635953 >seq4 Length=191835039 Score = 120 bits (132), Expect = 3e-22 Identities = 148/199 (74%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| ||| |||||||| || Sbjct 68257409 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTCGTGGTGGAGTCATCG 68257468 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || | ||| ||||| ||||| |||| || ||| Sbjct 68257469 GACACTATTGA--CAATGCCAAGGCAAGATTCAG-GACAATGAAGGTATTCATCCAAACC 68257525 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| ||||||||||| || | || ||| | ||||| | | ||||||| Sbjct 68257526 AGCAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATAGTTGCACTTTTGCTGATTACA 68257585 Query 25177 ATATTCAAAAAGAATCCAC 25195 | ||||| ||||||||||| Sbjct 68257586 ACATTCAGAAAGAATCCAC 68257604 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | ||||| || ||||||| | || |||||||| || Sbjct 68254688 AATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTGGAGTCTTC 68254747 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| | || | ||| ||||| || || || || || |||| Sbjct 68254748 AGACACGATTGACAATGTGAAGGCGAAGATTCAG-GACAAGGAGGGCATCCCCCCGGACC 68254806 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | || |||| || || ||| ||||||| Sbjct 68254807 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGGACCCTGGCAGATTACA 68254866 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || |||||||| || || Sbjct 68254867 ACATTCAGAAGGAATCCACCCTCCA 68254891 >seq7 Length=154015841 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| || ||||| || Sbjct 60357082 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 60357023 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||| ||||| || || || || Sbjct 60357022 GACACAATTGACAACGTCA---AAGCTAAGATCCAG-GACAAGGAAGGCATCCCCCCGGA 60356967 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||| || || || | || |||| |||||| | | || || Sbjct 60356966 CCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTGCGGACTA 60356907 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || ||||| || || || ||||||||||| || ||||| Sbjct 60356906 CAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTAAGGCTCAGGGGAGG 60356856 >seq2 Length=243061704 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||| ||| Sbjct 233057252 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGCTCT 233057311 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || ||||| || || | Sbjct 233057312 GACACAATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATC 233057369 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || |||||||| || || | || |||| ||||| ||| ||||||| Sbjct 233057370 AGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCTGATTACA 233057429 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || ||||| || || | ||||| Sbjct 233057430 ATATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 233057463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| |||||||| || Sbjct 229073129 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 229073188 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| |||| || ||| ||||| || || || || || ||||| Sbjct 229073189 GACACTATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 229073248 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || || | || || | | |||||||| Sbjct 229073249 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTGCTGATTACAAC 229073308 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||| || || | ||||| | || || ||||| Sbjct 229073309 ATCCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTCAGGGGAGG 229073355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||||| || Sbjct 229073357 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCTTCC 229073416 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 229073417 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 229073476 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || || | |||||| | | |||||||| Sbjct 229073477 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTTGCGGATTACAAC 229073536 Query 25179 ATTCAAAAAGA 25189 || || || || Sbjct 229073537 ATCCAGAAGGA 229073547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || |||||||||||| Sbjct 233056796 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCT 233056855 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 233056856 GACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 233056913 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || || || ||||| || | || || | || || | | ||||||| Sbjct 233056914 AGCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCTCGCTGATTACA 233056973 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||| || || | ||||| Sbjct 233056974 ACATCCAGAAGGAGAGCACCCTCCACCTGGTGCT 233057007 >seq3 Length=300915289 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||||||||| Sbjct 296745247 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 296745306 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| |||||| || || || || || || || ||||| Sbjct 296745307 GACACCATCGACAACGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCTCCGGACCAG 296745366 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 296745367 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGAGGGCCGCACCCTCGCGGACTACAAC 296745426 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 296745427 ATTCAGAAGGAGTCTACACTCCA 296745449 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || | || | ||||| | ||||| ||| || Sbjct 25197652 AATGCATATCTTTGTGAAGACACTTACTAGGAAGACTATCACTCTGGAAGTTGAGAGCTC 25197711 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || || || || ||| ||| ||| |||||||| || || || || ||| Sbjct 25197712 TGACACCATTGA--CAATGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCGCCAGAC 25197769 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || || || || || | ||||| ||| |||||| Sbjct 25197770 CAGCAGCGACTCATCTTTGCTGGAAAGCAGCCGGAGGACGGACGCACATTGGCTGATTAC 25197829 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| || || || || || || | | || ||||||| Sbjct 25197830 AATATCCAGAAAGAGTCTACTCTTCACTTGGTCCCCCGCCTCCGAGGAGG 25197879 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||| | || || || ||||||| | || || ||| || Sbjct 25197197 ATGCAGATATTTGTCAAGACTCTCACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 25197256 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | || || | ||| || || || || || || || || Sbjct 25197257 GACACTATCGA--CAATGTCAAGGCCAAGATTCA-GGATAAGGAGGGTATCCCTCCGGAT 25197313 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| ||||| || | || |||| ||| || ||| || || Sbjct 25197314 CAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGGACACTGGCTGACTAT 25197373 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || | || || | || ||||| || Sbjct 25197374 AACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTGAGAGGTGG 25197423 >seq4399 Length=1515107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||||||||| || || |||||||| | || || |||||||| || | || Sbjct 1364485 GACAAGGAAGGGATTCCTCCGGATCAACAGCGTCTGATATTCGCCGGCAAGCAGCTGGAG 1364544 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || || || || || || Sbjct 1364545 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTTCTC 1364604 Query 25212 AGGCTAAGAGGAGG 25225 ||||| || || || Sbjct 1364605 AGGCTCAGGGGTGG 1364618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433220321919035