Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 125 6e-24
seq4 120 3e-22
seq7 113 4e-20
seq2 105 6e-18
seq3 100 2e-16
seq4399 84.2 2e-11
>seq5
Length=158699395
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | || ||||||||||||
Sbjct 74944244 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTGGAGTCGTCT 74944303
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | || ||||| || ||| ||||| || || || || || |||||
Sbjct 74944304 GACACCATCGA-TAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 74944362
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||||||||| || | || |||| ||||| ||| || |||||
Sbjct 74944363 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAA 74944422
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || |||||||| || || | |||||
Sbjct 74944423 CATTCAGAAGGAATCCACTCTCCACCTGGTGCT 74944455
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| |||| || || |||||||| | ||||| ||||| |||
Sbjct 71681764 ATGCAAATCTTCGTGAAGACTCTGACTGGAAAGACCATCACACTTGAAGTTGAGTCTTCT 71681705
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || |||| ||||| | ||| ||||||||||| || ||||| |||||
Sbjct 71681704 GACACAATTGATAATGTGAAAGCAAAGATTCAA-GACAAAGAAGGCATCCCACCAGACCA 71681646
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || || || || || | || |||| || ||| | | || || ||
Sbjct 71681645 GCAGCGCCTCATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGGACTCTTGCTGACTATAA 71681586
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || ||||| || || || |||||
Sbjct 71681585 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCT 71681553
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| |||| || || ||||||| | || |||||||||||
Sbjct 71676703 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACCATCACCTTGGAGGTGGAGTCGTCA 71676644
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| ||||| || || || |||| |||||
Sbjct 71676643 GACACCATTGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCGCACCGGACCAG 71676584
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || ||||| || || || | || || | ||||| ||| || |||||
Sbjct 71676583 CAACGCCTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCTTGGCAGACTACAAC 71676524
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| ||||| || ||||| ||
Sbjct 71676523 ATTCAGAAAGAGTCTACGCTCCA 71676501
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || |||| || |||| |||||||| ||
Sbjct 81635742 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTGGAGTCCTCC 81635801
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| ||||| || || || || || |||||
Sbjct 81635802 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 81635861
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || | || |||| ||||| ||| || |||||
Sbjct 81635862 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 81635921
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || || |||||
Sbjct 81635922 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCT 81635953
>seq4
Length=191835039
Score = 120 bits (132), Expect = 3e-22
Identities = 148/199 (74%), Gaps = 5/199 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || ||||||| ||| |||||||| ||
Sbjct 68257409 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTCGTGGTGGAGTCATCG 68257468
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || | ||| ||||| ||||| |||| || |||
Sbjct 68257469 GACACTATTGA--CAATGCCAAGGCAAGATTCAG-GACAATGAAGGTATTCATCCAAACC 68257525
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| |||| ||||||||||| || | || ||| | ||||| | | |||||||
Sbjct 68257526 AGCAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATAGTTGCACTTTTGCTGATTACA 68257585
Query 25177 ATATTCAAAAAGAATCCAC 25195
| ||||| |||||||||||
Sbjct 68257586 ACATTCAGAAAGAATCCAC 68257604
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| | ||||| || ||||||| | || |||||||| ||
Sbjct 68254688 AATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTGGAGTCTTC 68254747
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || ||||| | || | ||| ||||| || || || || || ||||
Sbjct 68254748 AGACACGATTGACAATGTGAAGGCGAAGATTCAG-GACAAGGAGGGCATCCCCCCGGACC 68254806
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||||||||| || | || |||| || || ||| |||||||
Sbjct 68254807 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGGACCCTGGCAGATTACA 68254866
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| ||||| || |||||||| || ||
Sbjct 68254867 ACATTCAGAAGGAATCCACCCTCCA 68254891
>seq7
Length=154015841
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| |||| || ||||| ||
Sbjct 60357082 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 60357023
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| |||| || | || ||||| ||||| || || || ||
Sbjct 60357022 GACACAATTGACAACGTCA---AAGCTAAGATCCAG-GACAAGGAAGGCATCCCCCCGGA 60356967
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| || | || ||||| || || || | || |||| |||||| | | || ||
Sbjct 60356966 CCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTGCGGACTA 60356907
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| || || || || ||||| || || || ||||||||||| || |||||
Sbjct 60356906 CAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTAAGGCTCAGGGGAGG 60356856
>seq2
Length=243061704
Score = 105 bits (116), Expect = 6e-18
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || || ||||||| | || || ||| |||
Sbjct 233057252 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGCTCT 233057311
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || ||||| || || |
Sbjct 233057312 GACACAATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATC 233057369
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || |||||||| || || | || |||| ||||| ||| |||||||
Sbjct 233057370 AGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCTGATTACA 233057429
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| || || || ||||| || || | |||||
Sbjct 233057430 ATATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 233057463
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| |||| |||||||| ||
Sbjct 229073129 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 229073188
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| |||| || ||| ||||| || || || || || |||||
Sbjct 229073189 GACACTATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 229073248
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | || || | || || | | ||||||||
Sbjct 229073249 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTGCTGATTACAAC 229073308
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || ||| || || | ||||| | || || |||||
Sbjct 229073309 ATCCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTCAGGGGAGG 229073355
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || |||||||| ||
Sbjct 229073357 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCTTCC 229073416
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || || || || |||||
Sbjct 229073417 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 229073476
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | || || | |||||| | | ||||||||
Sbjct 229073477 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTTGCGGATTACAAC 229073536
Query 25179 ATTCAAAAAGA 25189
|| || || ||
Sbjct 229073537 ATCCAGAAGGA 229073547
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| | || ||||||||||||
Sbjct 233056796 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCT 233056855
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || || || || ||||
Sbjct 233056856 GACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 233056913
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || | || || || ||||| || | || || | || || | | |||||||
Sbjct 233056914 AGCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCTCGCTGATTACA 233056973
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || || ||| || || | |||||
Sbjct 233056974 ACATCCAGAAGGAGAGCACCCTCCACCTGGTGCT 233057007
>seq3
Length=300915289
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | ||||| || ||||||| | || || |||||||||
Sbjct 296745247 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 296745306
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| |||||| || || || || || || || |||||
Sbjct 296745307 GACACCATCGACAACGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCTCCGGACCAG 296745366
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || | || || | ||||| | | || |||||
Sbjct 296745367 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGAGGGCCGCACCCTCGCGGACTACAAC 296745426
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| || || || || || ||
Sbjct 296745427 ATTCAGAAGGAGTCTACACTCCA 296745449
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| | || | || | ||||| | ||||| ||| ||
Sbjct 25197652 AATGCATATCTTTGTGAAGACACTTACTAGGAAGACTATCACTCTGGAAGTTGAGAGCTC 25197711
Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| || || || || ||| ||| ||| |||||||| || || || || |||
Sbjct 25197712 TGACACCATTGA--CAATGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCGCCAGAC 25197769
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || ||||| || || || || || | ||||| ||| ||||||
Sbjct 25197770 CAGCAGCGACTCATCTTTGCTGGAAAGCAGCCGGAGGACGGACGCACATTGGCTGATTAC 25197829
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| || ||||| || || || || || || | | || |||||||
Sbjct 25197830 AATATCCAGAAAGAGTCTACTCTTCACTTGGTCCCCCGCCTCCGAGGAGG 25197879
Score = 82.4 bits (90), Expect = 7e-11
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| |||||| | || || || ||||||| | || || ||| ||
Sbjct 25197197 ATGCAGATATTTGTCAAGACTCTCACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 25197256
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||||||| || || | || || | ||| || || || || || || || ||
Sbjct 25197257 GACACTATCGA--CAATGTCAAGGCCAAGATTCA-GGATAAGGAGGGTATCCCTCCGGAT 25197313
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || ||||| ||||| || | || |||| ||| || ||| || ||
Sbjct 25197314 CAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGGACACTGGCTGACTAT 25197373
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || ||||| || || | || || | || ||||| ||
Sbjct 25197374 AACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTGAGAGGTGG 25197423
>seq4399
Length=1515107
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||| ||||||||||| || || |||||||| | || || |||||||| || | ||
Sbjct 1364485 GACAAGGAAGGGATTCCTCCGGATCAACAGCGTCTGATATTCGCCGGCAAGCAGCTGGAG 1364544
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| ||||| ||| || ||||| ||||| || || || || || || || || ||
Sbjct 1364545 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTTCTC 1364604
Query 25212 AGGCTAAGAGGAGG 25225
||||| || || ||
Sbjct 1364605 AGGCTCAGGGGTGG 1364618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433220321919035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |