Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq11158 98.7 1e-15 seq5 96.9 4e-15 seq2 95.1 1e-14 seq6 89.7 6e-13 seq4 87.8 2e-12 seq1167 84.2 2e-11 seq3 84.2 2e-11 >seq1 Length=275477322 Score = 100 bits (110), Expect = 3e-16 Identities = 87/106 (82%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 274679124 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 274679183 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||||| || ||||| ||||||| ||||| || |||||||| Sbjct 274679184 GTGGGTTCAAATCCCACTTCTGACAATTTATTTTT--TATTTTTGT 274679227 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 189225708 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 189225765 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||| || |||||| ||| || |||| || || Sbjct 189225766 GGGTTCAAATCCCACAGCTGTCACAATTTTTTTT 189225799 >seq11158 Length=269184 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/107 (81%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 155765 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 155706 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| |||||||| |||||| | || ||||| ||||||| Sbjct 155705 GTGGGTTCAAACCCCACTTCTGACACTTGTTTTTTGGA--TTTTGTT 155661 >seq5 Length=158699395 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 151602514 ACCGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 151602455 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||||| ||||| || Sbjct 151602454 GCGTGGGTTCAAATCCCACTTCTGACAATTTATTTTT 151602418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 105027254 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 105027195 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||||| || ||||| |||||| ||||| || |||||||| Sbjct 105027194 GTGGGTTCAAATCCCACTTCTGACAGTTTATT-TTTTTATTTTTGT 105027150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 33585058 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 33584999 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 33584998 GTGGGTTCAAATCCCACTTCTGACA 33584974 >seq2 Length=243061704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 182368179 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 182368120 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 ||||||| || ||||| |||||| ||||| || |||||||| Sbjct 182368119 GTGGGTTGAAATCCCACTTCTGACAGTTTATTTTTTTTATTTTTGT 182368074 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1175359 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1175300 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1175299 TGGGTTCAAATCCCACTTCTGACA 1175276 >seq6 Length=240577051 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 202002171 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 202002230 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||| || ||||| |||||| ||| Sbjct 202002231 TGGGTTCAAATCCCACTTCTGACACATT 202002258 >seq4 Length=191835039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 163599833 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 163599774 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 163599773 GTGGGTTCAAATCCCACTTCTGACA 163599749 >seq1167 Length=218316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 47110 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 47053 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| ||| || || || Sbjct 47052 GGGTTCAAATCCCACAGCTGTCAATTTTTTTTT 47020 >seq3 Length=300915289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 217012675 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 217012618 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGGTT 126375 ||| || |||||| ||| || ||| || | |||||||| || || Sbjct 217012617 TTCAAATCCCACAGCTGTCATATTTTTTCCGTTTTTTTTGTTTCGTTT 217012570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556718877064360