Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 3e-16
seq11158 98.7 1e-15
seq5 96.9 4e-15
seq2 95.1 1e-14
seq6 89.7 6e-13
seq4 87.8 2e-12
seq1167 84.2 2e-11
seq3 84.2 2e-11
>seq1
Length=275477322
Score = 100 bits (110), Expect = 3e-16
Identities = 87/106 (82%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 274679124 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 274679183
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368
|||||||| || ||||| ||||||| ||||| || ||||||||
Sbjct 274679184 GTGGGTTCAAATCCCACTTCTGACAATTTATTTTT--TATTTTTGT 274679227
Score = 82.4 bits (90), Expect = 8e-11
Identities = 76/94 (81%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 189225708 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 189225765
Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357
|||||| || |||||| ||| || |||| || ||
Sbjct 189225766 GGGTTCAAATCCCACAGCTGTCACAATTTTTTTT 189225799
>seq11158
Length=269184
Score = 98.7 bits (108), Expect = 1e-15
Identities = 87/107 (81%), Gaps = 4/107 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 155765 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 155706
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
|||||||| |||||||| |||||| | || ||||| |||||||
Sbjct 155705 GTGGGTTCAAACCCCACTTCTGACACTTGTTTTTTGGA--TTTTGTT 155661
>seq5
Length=158699395
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/97 (82%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320
|| |||||| ||||||||||||||||||||||||| | ||| |||||| | || || |
Sbjct 151602514 ACCGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 151602455
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| || ||||| ||||||| ||||| ||
Sbjct 151602454 GCGTGGGTTCAAATCCCACTTCTGACAATTTATTTTT 151602418
Score = 95.1 bits (104), Expect = 1e-14
Identities = 86/106 (81%), Gaps = 3/106 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 105027254 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 105027195
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368
|||||||| || ||||| |||||| ||||| || ||||||||
Sbjct 105027194 GTGGGTTCAAATCCCACTTCTGACAGTTTATT-TTTTTATTTTTGT 105027150
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 33585058 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 33584999
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 33584998 GTGGGTTCAAATCCCACTTCTGACA 33584974
>seq2
Length=243061704
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/106 (80%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 182368179 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 182368120
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368
||||||| || ||||| |||||| ||||| || ||||||||
Sbjct 182368119 GTGGGTTGAAATCCCACTTCTGACAGTTTATTTTTTTTATTTTTGT 182368074
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 1175359 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1175300
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 1175299 TGGGTTCAAATCCCACTTCTGACA 1175276
>seq6
Length=240577051
Score = 89.7 bits (98), Expect = 6e-13
Identities = 73/88 (83%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 202002171 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 202002230
Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351
||||||| || ||||| |||||| |||
Sbjct 202002231 TGGGTTCAAATCCCACTTCTGACACATT 202002258
>seq4
Length=191835039
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 163599833 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 163599774
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 163599773 GTGGGTTCAAATCCCACTTCTGACA 163599749
>seq1167
Length=218316
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 47110 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 47053
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| ||| || || ||
Sbjct 47052 GGGTTCAAATCCCACAGCTGTCAATTTTTTTTT 47020
>seq3
Length=300915289
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/108 (78%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 217012675 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 217012618
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGGTT 126375
||| || |||||| ||| || ||| || | |||||||| || ||
Sbjct 217012617 TTCAAATCCCACAGCTGTCATATTTTTTCCGTTTTTTTTGTTTCGTTT 217012570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556718877064360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |