Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 399 4e-106 seq2 378 1e-99 >seq3 Length=300915289 Score = 399 bits (442), Expect = 4e-106 Identities = 620/871 (71%), Gaps = 21/871 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| | |||||||||||| | ||| |||||| || Sbjct 250096478 GATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGC 250096419 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGA 42400 ||||||| ||||||| || ||| || | |||||| | | || || | |||| Sbjct 250096418 CGAGGAGGTTGACCTCTCCGCCGACGCGCGCCACTGGGACGCGGCGCTCTCCAACGACGA 250096359 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 ||| || || | || ||||||||||||||||| |||||||| || || Sbjct 250096358 GCGCCACTTCATCTCTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGA 250096299 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 |||||| ||| || | |||||| || || ||| | ||||||||| ||||||||| Sbjct 250096298 GAACCTCGCCTCCCGCTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGG 250096239 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 ||||||||| ||||| |||||| | ||||| ||| ||||| | |||||| | ||||| Sbjct 250096238 CTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTA 250096179 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 ||||| ||| || |||| || | || ||| ||| | || || || ||| | | Sbjct 250096178 CATCCGCGATGGCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCATCCCCGCCGT 250096119 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCG 42699 ||||| |||||||| | ||||||||| | || ||| |||| || Sbjct 250096118 GCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGC----TTCGCCG 250096063 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | || || ||||| || ||||||||||||||||||||||||| ||||| | ||| Sbjct 250096062 AGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCA 250096003 Query 42760 TCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||||||| || || || ||||| || ||||||||||| ||||| |||||| Sbjct 250096002 TCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGGCTCACCTTCTCCAACGAGCTCATC 250095944 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 | | |||||||| || ||| | ||||| ||||||||||| | ||| || |||| | Sbjct 250095943 TCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGC 250095887 Query 42879 CACAAGCCCTCGA--AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGA 42936 |||| ||||| |||| || ||||| | ||| || | || ||||| || |||||| Sbjct 250095886 AGCAAG--CTCGACGAGGACCGTGTCCGCGAGATCGTCGCCGACGCCGTTGACATCGAGC 250095829 Query 42937 AGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGT 42996 |||||| || | |||| ||||| | || |||||||||||| || |||||| Sbjct 250095828 GCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGGGCTCATGA 250095769 Query 42997 GCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTC 43055 || |||||||| ||| ||||||||||| || || || | | |||| | || | Sbjct 250095768 GCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGC-GCTGGGGCACAAGAAGATG 250095710 Query 43056 TACAAC-ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 |||||| |||| ||| ||||||| |||||| ||||||| || ||||||||||||| Sbjct 250095709 TACAACGTCGCC-AACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAA 250095651 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| |||||||||||||||| || |||||| Sbjct 250095650 CTTCTTCGAGAAGCGCGTCGGGGAGTACCAG 250095620 >seq2 Length=243061704 Score = 378 bits (418), Expect = 1e-99 Identities = 600/846 (71%), Gaps = 27/846 (3%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||| ||||| ||| | |||||| || ||| | Sbjct 119861443 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAAGAGGTGGACCTGTCCGCCGACGCC 119861384 Query 42372 GCCGGCTGGGA---GTCACTGTC---TGA-GAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | |||||| ||| || || ||| || || | ||| || || | || Sbjct 119861383 CGCCACTGGGACGAGTCCCTCTCCCCTGACGAGCGCCAC----TTCATCTCCCACGTCCT 119861328 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 |||||||||||||||||| |||||||| || |||||||| || | | |||||| Sbjct 119861327 GGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCGCGCTTCATGTC 119861268 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| | Sbjct 119861267 CGACGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACAT 119861208 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||||| ||| ||||| | |||||| | || ||||||| || || |||| | Sbjct 119861207 CCACTCGGAGATGTACTCGCTGCTGCTCGAGACTTACATCCGCGACGGCGCCGAGAAGGA 119861148 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | | || ||| ||||| || || | ||| | || |||||||||||||| | Sbjct 119861147 CCGCCTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCGGACTGGGCCAT 119861088 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 |||||||| | || ||| |||| |||| | || || || || || || Sbjct 119861087 GCGGTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGACTCGTCGCGTTCGCCTGCG 119861032 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTG 42782 ||||||||||||||||||||||| ||||| | ||||||||||||||||| || ||| Sbjct 119861031 TCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGC 119860972 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | Sbjct 119860971 TC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGC 119860913 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGG 42900 ||||| || |||||||| | |||| | |||| | |||| ||||| || || | Sbjct 119860912 GACTTCGCGTGCCTCCTCT--ACGAG-CTCCTCCGCAGCAAG--CTCGACGAGTCCCGCG 119860858 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 |||| | ||| || | || |||||||| |||||| |||||| || | |||| | Sbjct 119860857 TCCGCGAGATCGTCGCCGACGCCGTGGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCC 119860798 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 |||| | || |||||||||||| || |||||| || |||||||| ||| |||||||| Sbjct 119860797 CCGTCGCGCTCGTCGGCATGAACGGCGCGCTCATGAGCGAGTACATCGAGTTCGTCGCCG 119860738 Query 43021 ACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 ||| || || || || |||| || | | |||||| | | |||||||||| Sbjct 119860737 ACCGCCTGCTCATGGCACTAGGGT-GCAACAAGATGTACAACGCCGCCAACCCCTTCGAC 119860679 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 | |||||| ||||||| || |||||||||||||||| ||||||||||| |||| ||| Sbjct 119860678 TGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGAC 119860619 Query 43140 TACCAG 43145 |||||| Sbjct 119860618 TACCAG 119860613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944098523350640