Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq4 104 2e-17 seq3 96.9 3e-15 seq5 91.5 1e-13 seq7 89.7 4e-13 seq6 89.7 4e-13 seq20180 84.2 2e-11 seq4399 84.2 2e-11 seq1 84.2 2e-11 >seq2 Length=243061704 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||||||||| || || |||||||||||||| ||||||||||| || Sbjct 229073355 CCTCCCCTGAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGC- 229073297 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | |||||||||||||| ||||| | |||||| ||| || Sbjct 229073296 AAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGG 229073237 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| | | || |||| | || | | | || | ||| || Sbjct 229073236 GATGCCCTCCTTGTCC-TGGATCTTGGCTTTCACGTTGTCGATAGTGTCGGAAGACTCCA 229073178 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || || ||||||||||| ||||| Sbjct 229073177 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 229073129 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| || || ||||| || || |||||||||||||| ||||||||||| || Sbjct 229073583 CCACCCCTCAGGCGGAGAACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGC- 229073525 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| |||||||||||||| ||||| | |||||| ||| || Sbjct 229073524 AAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGG 229073465 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 229073464 GATGCCCTCCTTGTCC 229073449 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| || |||||||| || || |||||||||||||||||||| ||||| || Sbjct 233057250 CCACCCCTCAGGCGGAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTATAATCAGCA 233057191 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| |||| |||||||| || || ||||| |||||||| ||| || Sbjct 233057190 AGAGTG-CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 233057132 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 233057131 GATGCCCTCCTTGTCC 233057116 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||||||||| || || |||||||||||||| ||||||||||| || Sbjct 233056794 CCTCCCCTGAGACGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCG 233056735 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | |||||||| || || || || | |||||| ||| || Sbjct 233056734 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 233056675 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 233056674 ATGCCCTCCTTGTCC 233056660 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || |||||||| || || |||||||||||||| ||||||||||| || Sbjct 233057022 CCACCCCTCAAACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGCG 233056963 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | |||||||| || || || || | |||||| ||| || Sbjct 233056962 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 233056903 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 233056902 ATGCCCTCCTTGTCC 233056888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| || |||||||| |||| || Sbjct 233057469 AGACGAAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGG 233057410 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||| |||||||| ||||| ||||||||||| || | || ||| Sbjct 233057409 CCATCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCGGGGGGAATGCCCTCC 233057350 Query 34030 TTGTCC 34035 |||||| Sbjct 233057349 TTGTCC 233057344 >seq4 Length=191835039 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || ||||| || || || || ||| |||||||||||||||||||| Sbjct 68254919 GAAACCACCACGGAGGCGCAGAACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAATC 68254860 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 ||||| ||| | || |||| |||||||||||||| || ||||||||||| ||| Sbjct 68254859 TGCCAGGGTCCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGG 68254800 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTT 34043 || | || ||| |||||| ||| || Sbjct 68254799 GGGGATGCCCTCCTTGTCCTGAATCTT 68254773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || || || || || ||| |||||| ||||||||||||||||| Sbjct 68254231 CCTCCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTTTGAATGTTGTAATCTGC- 68254173 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| | || || | ||||| || ||||| || ||||||||||| || || Sbjct 68254172 AAGCGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGG 68254113 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | || |||||| || ||| ||| | || | || |||||| ||| || Sbjct 68254112 AATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATC---GTATCAGAAGACTC 68254056 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| ||||| ||||||||||| ||||| Sbjct 68254055 CACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 68254005 >seq3 Length=300915289 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| |||||||| |||||||| ||| |||||||| ||||| || || ||| Sbjct 25198107 CCTCCCCTCAAACGCAGCACAAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGCC 25198048 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| | || ||||||||||| || ||||| || || |||||||| || Sbjct 25198047 AATGTGCGCCCATCCTCCAATTGCTTCCCAGCAAAGATAAGTCGCTGCTGGTC 25197995 >seq5 Length=158699395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||| || || || ||| |||||| || ||||| || || || Sbjct 71677389 CCACCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTTTGGATGTTATAGTCAGC- 71677447 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| ||| |||| || | |||||||| ||||| |||||||||||||| ||| ||| Sbjct 71677448 AAGTGTACGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGG 71677507 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | ||| |||||| || || ||| | || | | |||| | ||||| Sbjct 71677508 GATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCA---ATTGTATCCGAGGATTC 71677564 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| ||||||||||| ||||| Sbjct 71677565 AACCTCGAGGGTGATGGTCTTGCCTGTGAGTGTCTTCACAAAGATCTGCAT 71677615 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| ||||| ||| ||||||||| |||||||| ||||||| || Sbjct 81635959 AGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGG 81635900 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||||||||| || ||||||||||| || || | || ||| Sbjct 81635899 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCC 81635840 Query 34030 TTGTCC 34035 |||||| Sbjct 81635839 TTGTCC 81635834 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| |||||| || |||||||||||||||||| || || Sbjct 64494125 CCACCCCTGAGCCTCAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCT 64494184 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | | || ||||||||||| || ||||| ||||| | ||||| || || Sbjct 64494185 AACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 64494244 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 64494245 ATGCCCTCCTTGTCC 64494259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||||||||||| || |||| || Sbjct 74944461 AGGCGGAGCACCAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGG 74944402 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||||||||| || || |||||||| ||| || | || ||| Sbjct 74944401 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 74944342 Query 34030 TTGTCC 34035 |||||| Sbjct 74944341 TTGTCC 74944336 >seq7 Length=154015841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| || |||||||| ||||| ||| |||||| || ||||||||||| | | Sbjct 60356400 CCACCTCGCAGACGAAGCACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAG-C 60356458 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || ||||| |||||||| ||||| || || |||||||| || || Sbjct 60356459 AAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 60356518 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 60356519 AATGCCCTCCTTGTCC 60356534 Score = 86.0 bits (94), Expect = 5e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || ||||| || ||| ||||||||| |||||||| || || | | || | Sbjct 112585051 AGGCGGAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGG 112585110 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | |||| |||| ||||| |||||||| |||||||||||||||||| Sbjct 112585111 C-CGTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCC 112585155 >seq6 Length=240577051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||||| ||||| || || || ||| ||||||||| |||||||| || ||| Sbjct 194679034 CCACCTCTCAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 194678975 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||||| ||||| || ||||||||||| ||| || Sbjct 194678974 AGAGTGCGGC-CATCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGGGG 194678916 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 194678915 AATGCCCTCCTTGTCC 194678900 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || |||||||| || ||||| ||||||||| |||||||| || || Sbjct 108487418 CCTCCCCTGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCT 108487359 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | ||||||||||| || || ||||||||||| ||| ||| Sbjct 108487358 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 108487299 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 108487298 ATGCCCTCCTTGTCC 108487284 >seq20180 Length=3961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 3441 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 3383 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 3382 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 3351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 3441 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 3383 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 3382 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 3351 >seq4399 Length=1515107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 1364618 CCACCCCTGAGCCTGAGAACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCC 1364559 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || | || |||| ||||||||||| |||||||| ||||| |||||| Sbjct 1364558 AGTGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAATATCAGACGCTGTTGATCC 1364505 >seq1 Length=275477322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | || Sbjct 247621443 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGG 247621502 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 247621503 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 247621562 Query 34030 TTGTCC 34035 |||||| Sbjct 247621563 TTGTCC 247621568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396963733591978