Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq3 141 2e-28 >seq2 Length=243061704 Score = 154 bits (170), Expect = 3e-32 Identities = 358/534 (67%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 |||||| ||||||||| | | | || || || | |||||| | ||||| | | Sbjct 119861143 CTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCGGACTGGGCCATGCGG 119861084 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || ||| | || || ||||| |||||||| | | ||||| || || Sbjct 119861083 TGGATCGACGGCGGGGAGCGCTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGC 119861024 Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387 || | || || || |||||||||||||| ||||| ||| ||| | ||||| Sbjct 119861023 ATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCG 119860964 Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-G 243446 |||||| | || |||||| ||||| |||||||||||||| ||| | |||| | Sbjct 119860963 GGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCG 119860904 Query 243447 TGAGCTTATGTATTCAAAGCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAAT 243503 || || | || |||| | |||||| || | || || ||| | || Sbjct 119860903 TGC-CTCCTCTACGAGCTCCTCCGCAGCAAGCTCGACGAGTCC---CGCGTCCGCGAGAT 119860848 Query 243504 CATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCT 243563 | || | || || || || | ||| || ||| | |||||||| | || | ||| Sbjct 119860847 CGTCGCCGACGCCGTGGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCT 119860788 Query 243564 TATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 243623 | ||||||||| | |||||| | |||||||||| ||||| ||||||||| | | Sbjct 119860787 CGTCGGCATGAACGGCGCGCTCATGAGCGAGTACATCGAGTTCGTCGCCGACCGCCTGCT 119860728 Query 243624 CATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCT 243683 ||| || || || | | || |||||||| || |||||||| | || |||||||| Sbjct 119860727 CATGGCACTAGGGTGCAACAAGATGTACAACGCCGCCAACCCCTTCGACTGGATGGAGCT 119860668 Query 243684 CATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| ||||| || || || || ||||||||||| ||||||||| |||| || || Sbjct 119860667 CATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 119860614 >seq3 Length=300915289 Score = 141 bits (156), Expect = 2e-28 Identities = 303/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 250096069 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 250096010 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| || ||| | || |||||| Sbjct 250096009 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAG 250095950 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| || | |||| || | || ||| Sbjct 250095949 CTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 250095890 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | | |||||| | | | | || ||| | ||| || | || || ||||| | ||| Sbjct 250095889 CGCAGCAAGCT-CGACGAGGACCGTGTCCGCGAGATCGTCGCCGACGCCGTTGACATCGA 250095831 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || ||| | |||||||| | || | ||| | ||||||||| | ||||| Sbjct 250095830 GCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGGGCTCAT 250095771 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| | Sbjct 250095770 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACAAGAAGAT 250095711 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| | ||||| || | || ||||||||||| ||||| || || || || || Sbjct 250095710 GTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAA 250095651 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 250095650 CTTCTTCGAGAAGCGCGTCGGGGAGTACCA 250095621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102591890177150