Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 3e-32
seq3 141 2e-28
>seq2
Length=243061704
Score = 154 bits (170), Expect = 3e-32
Identities = 358/534 (67%), Gaps = 8/534 (1%)
Strand=Plus/Minus
Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267
|||||| ||||||||| | | | || || || | |||||| | ||||| | |
Sbjct 119861143 CTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCGGACTGGGCCATGCGG 119861084
Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327
||| | || ||| | || || ||||| |||||||| | | ||||| || ||
Sbjct 119861083 TGGATCGACGGCGGGGAGCGCTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGC 119861024
Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387
|| | || || || |||||||||||||| ||||| ||| ||| | |||||
Sbjct 119861023 ATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCG 119860964
Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-G 243446
|||||| | || |||||| ||||| |||||||||||||| ||| | |||| |
Sbjct 119860963 GGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCG 119860904
Query 243447 TGAGCTTATGTATTCAAAGCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAAT 243503
|| || | || |||| | |||||| || | || || ||| | ||
Sbjct 119860903 TGC-CTCCTCTACGAGCTCCTCCGCAGCAAGCTCGACGAGTCC---CGCGTCCGCGAGAT 119860848
Query 243504 CATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCT 243563
| || | || || || || | ||| || ||| | |||||||| | || | |||
Sbjct 119860847 CGTCGCCGACGCCGTGGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCT 119860788
Query 243564 TATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 243623
| ||||||||| | |||||| | |||||||||| ||||| ||||||||| | |
Sbjct 119860787 CGTCGGCATGAACGGCGCGCTCATGAGCGAGTACATCGAGTTCGTCGCCGACCGCCTGCT 119860728
Query 243624 CATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCT 243683
||| || || || | | || |||||||| || |||||||| | || ||||||||
Sbjct 119860727 CATGGCACTAGGGTGCAACAAGATGTACAACGCCGCCAACCCCTTCGACTGGATGGAGCT 119860668
Query 243684 CATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||| ||||| || || || || ||||||||||| ||||||||| |||| || ||
Sbjct 119860667 CATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 119860614
>seq3
Length=300915289
Score = 141 bits (156), Expect = 2e-28
Identities = 303/450 (67%), Gaps = 2/450 (0%)
Strand=Plus/Minus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
|| || ||||| |||||||||| | ||||| || || || | || || || |||
Sbjct 250096069 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 250096010
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||||||||||| ||||| ||| || | ||||| || ||| | || ||||||
Sbjct 250096009 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAG 250095950
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468
||||| |||||||||||||| || | |||| || | || |||
Sbjct 250095949 CTCATCTCCCGCGACGAGGGCCTCCATTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 250095890
Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527
| | |||||| | | | | || ||| | ||| || | || || ||||| | |||
Sbjct 250095889 CGCAGCAAGCT-CGACGAGGACCGTGTCCGCGAGATCGTCGCCGACGCCGTTGACATCGA 250095831
Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587
|| ||| | |||||||| | || | ||| | ||||||||| | |||||
Sbjct 250095830 GCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGGGCTCAT 250095771
Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647
| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| |
Sbjct 250095770 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACAAGAAGAT 250095711
Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707
||||||| | ||||| || | || ||||||||||| ||||| || || || || ||
Sbjct 250095710 GTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAA 250095651
Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||||||||| ||||| ||| | || || ||
Sbjct 250095650 CTTCTTCGAGAAGCGCGTCGGGGAGTACCA 250095621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102591890177150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |