Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 1e-34
seq3 147 3e-30
seq5 107 2e-18
seq8759 100 3e-16
>seq2
Length=243061704
Score = 161 bits (178), Expect = 1e-34
Identities = 339/496 (68%), Gaps = 11/496 (2%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| || || ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 119860616 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 119860675
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGTTGGCACCCCAATCTGTTTGAGGAGA 125875
| || || ||||| | ||| | || ||||| ||||| | | | ||| ||
Sbjct 119860676 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTG-CACCCTAGTGCCAT-GAGCAGG 119860733
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934
|| || | |||| |||| |||||||| ||| | | |||||| |||| ||| |
Sbjct 119860734 CGGTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCG 119860793
Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994
|| ||||||||||| ||| |||| | ||| || |||||||| || ||||| |
Sbjct 119860794 ACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTC 119860852
Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACT 126053
| | | | | | | | | | |||| | || | |||| |||| | || |
Sbjct 119860853 GCGGACGCGGGACTCGTCGAGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCACG-CGAAGT 119860911
Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113
| ||| || |||||||| ||||||||||| || || |||||| || || |||||||
Sbjct 119860912 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 119860971
Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173
| || |||||||| | |||||| || || || || || |||||||||||||| ||||| |
Sbjct 119860972 GCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 119861031
Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233
| || |||||||| | ||| ||||| || | ||||| | ||| | |||| ||
Sbjct 119861032 CGCAGGCGAACGCGACGAGTCGCTCGGC---GAAGCGCTCCCCGCCGTCGATCCACCGCA 119861088
Query 126234 TCGCCCACTGCGCCTT 126249
| ||||| | ||||||
Sbjct 119861089 TGGCCCAGTCCGCCTT 119861104
Score = 107 bits (118), Expect = 2e-18
Identities = 297/447 (66%), Gaps = 10/447 (2%)
Strand=Plus/Plus
Query 10710 CCAACTTCTTGTCTCTGGCG-TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGG 10766
||| |||||||| ||| | || ||||| | |||| ||| || |||||||| ||
Sbjct 112812024 CCAGCTTCTTGT---TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGG 112812080
Query 10767 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 10826
| ||| ||| ||| || || || ||||| || |||||||| || ||| |||| ||||
Sbjct 112812081 GGAGGCCGACGCTGACCTGGCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGA 112812140
Query 10827 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 10886
| || ||||| || || ||||| || | || ||| | ||| || || ||||
Sbjct 112812141 TCTCGGGCCGGTTGGTGGCGGCGATCACGATGACGCCGCTGTCGCCGGAGAACCCGTCCA 112812200
Query 10887 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCC 10945
|||| |||| || || |||| || || || | || || ||| || || | |||
Sbjct 112812201 TCTCCGTCAGCAGCTGGTTGAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATG-CCC 112812259
Query 10946 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTT 11005
| | ||| || ||||||||||| | || |||||||| |||| ||||| ||
Sbjct 112812260 GTCCCGCGCTGGCGGCCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTTG 112812319
Query 11006 TCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCC 11065
| ||| | |||| || || || | | || || || || |||||||| ||
Sbjct 112812320 GCCTTGGCCTTGTTGAAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACAAACATCTCG 112812379
Query 11066 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCG 11124
| || | || ||| ||| | || |||||| ||| || || |||||||||||
Sbjct 112812380 ATGAACTCGGACCCGG-ACAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTT 112812438
Query 11125 GGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
|| || || |||||||||||||| ||
Sbjct 112812439 CGCCAGCAGCGTCTTCCCCGTCCCCGG 112812465
>seq3
Length=300915289
Score = 147 bits (162), Expect = 3e-30
Identities = 312/457 (68%), Gaps = 18/457 (4%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| ||||| || ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 250095623 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 250095682
Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872
| || |||||||| | ||| | || || ||| ||| | | ||||
Sbjct 250095683 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTGTGCCCC--AGCGCCATGAGC 250095737
Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931
|| || || | |||| |||| ||||||| ||| | | |||||| |||| |||
Sbjct 250095738 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGC 250095797
Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991
| || ||||||||||| ||| |||| | ||| || || ||||| || |||||
Sbjct 250095798 GCGACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGAT 250095856
Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048
|| | | |||| | | | | |||| | | ||| | || ||| || |||
Sbjct 250095857 CTCGCGGACACGGTCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 250095913
Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108
|| || ||||| |||||||| ||||||||||| || || |||||| || || ||
Sbjct 250095914 GAAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGG 250095973
Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168
|||||| || |||||||| | |||||| || || || || || |||||||||||||| ||
Sbjct 250095974 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 250096033
Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205
||| || || ||||| || | ||| ||||| || |||
Sbjct 250096034 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 250096070
>seq5
Length=158699395
Score = 107 bits (118), Expect = 2e-18
Identities = 252/378 (67%), Gaps = 2/378 (1%)
Strand=Plus/Plus
Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834
|| |||| || |||||||| | ||||| || || || || ||| || | |||
Sbjct 85378077 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGTGCTGAGTCGAGCACATCTGGC 85378136
Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894
| ||| ||||| || | |||| || || | | | ||||||| ||||||||||||
Sbjct 85378137 CTGTTAGTCGCAGCAAGCACAATGACACCGCTGTTGCCCGCAAAGCCGTCCATCTCAGTC 85378196
Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 10953
||||| || |||||||| || || | || || || | | | | || |||| ||
Sbjct 85378197 AAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 85378255
Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013
||| | |||||||| ||||| ||||||||||| || || || || || | |||
Sbjct 85378256 CTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 85378315
Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073
|| |||| || ||||| || ||||| ||||| || || | || || || |
Sbjct 85378316 CTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCGACGAAGAGCTCGACGAACTC 85378375
Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133
|| |||| || || ||| || ||| || || || |||| ||| ||||| | |||
Sbjct 85378376 GGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCGGCGACGGCACGGGCCAAGAG 85378435
Query 11134 GGTCTTCCCCGTCCCAGG 11151
||| || || ||||| ||
Sbjct 85378436 GGTTTTACCAGTCCCGGG 85378453
Score = 96.9 bits (106), Expect = 4e-15
Identities = 193/281 (69%), Gaps = 4/281 (1%)
Strand=Plus/Plus
Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933
|| || ||||||||||||||||| ||||| |||| || || || | ||||||||| |
Sbjct 71162821 TCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTCTGCTCCCTTTCATCATTTCCA 71162880
Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993
| ||| | || | |||| ||||||| || ||||||||||| | || || ||
Sbjct 71162881 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 71162940
Query 10994 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052
|| || ||| | | || | ||| ||| | ||| || ||||| ||||| |||||
Sbjct 71162941 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 71162999
Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111
|||||||| |||||||| | || | | ||| |||| || || || || | || |
Sbjct 71163000 AACAAACATCTCCACAAACTCGGAGCCTGAA-ATTGAGAAAAATGGCACACCAGCCTCTC 71163058
Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152
|||| || || ||| || | || || || || ||||||
Sbjct 71163059 CCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTCCAGGT 71163099
>seq8759
Length=1216561
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 115233
||| ||||||||||| ||||| ||||| || ||||||| || || | ||| | ||
Sbjct 958199 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTG 958140
Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293
||||| || ||| |||| | | | | |||||||||| ||| || || | |||
Sbjct 958139 AGACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACCGA 958080
Query 115294 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 115353
|||| ||| | ||||| || || |||| | | | ||||||||| || ||||||
Sbjct 958079 AACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCATCGAGCTTCAAGAGGTA 958020
Query 115354 ACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401
| | |||||| ||||||| |||||| || | |||| |||||||
Sbjct 958019 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCGTAGTCGAAGTCCCT 957972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597201356968120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |