Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq3 147 3e-30 seq5 107 2e-18 seq8759 100 3e-16 >seq2 Length=243061704 Score = 161 bits (178), Expect = 1e-34 Identities = 339/496 (68%), Gaps = 11/496 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 119860616 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 119860675 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | ||| | || ||||| ||||| | | | ||| || Sbjct 119860676 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTG-CACCCTAGTGCCAT-GAGCAGG 119860733 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934 || || | |||| |||| |||||||| ||| | | |||||| |||| ||| | Sbjct 119860734 CGGTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCG 119860793 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || ||||||||||| ||| |||| | ||| || |||||||| || ||||| | Sbjct 119860794 ACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTC 119860852 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACT 126053 | | | | | | | | | | |||| | || | |||| |||| | || | Sbjct 119860853 GCGGACGCGGGACTCGTCGAGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCACG-CGAAGT 119860911 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 119860912 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 119860971 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || |||||||| | |||||| || || || || || |||||||||||||| ||||| | Sbjct 119860972 GCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 119861031 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 | || |||||||| | ||| ||||| || | ||||| | ||| | |||| || Sbjct 119861032 CGCAGGCGAACGCGACGAGTCGCTCGGC---GAAGCGCTCCCCGCCGTCGATCCACCGCA 119861088 Query 126234 TCGCCCACTGCGCCTT 126249 | ||||| | |||||| Sbjct 119861089 TGGCCCAGTCCGCCTT 119861104 Score = 107 bits (118), Expect = 2e-18 Identities = 297/447 (66%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 10710 CCAACTTCTTGTCTCTGGCG-TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGG 10766 ||| |||||||| ||| | || ||||| | |||| ||| || |||||||| || Sbjct 112812024 CCAGCTTCTTGT---TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGG 112812080 Query 10767 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 10826 | ||| ||| ||| || || || ||||| || |||||||| || ||| |||| |||| Sbjct 112812081 GGAGGCCGACGCTGACCTGGCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGA 112812140 Query 10827 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 10886 | || ||||| || || ||||| || | || ||| | ||| || || |||| Sbjct 112812141 TCTCGGGCCGGTTGGTGGCGGCGATCACGATGACGCCGCTGTCGCCGGAGAACCCGTCCA 112812200 Query 10887 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCC 10945 |||| |||| || || |||| || || || | || || ||| || || | ||| Sbjct 112812201 TCTCCGTCAGCAGCTGGTTGAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATG-CCC 112812259 Query 10946 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTT 11005 | | ||| || ||||||||||| | || |||||||| |||| ||||| || Sbjct 112812260 GTCCCGCGCTGGCGGCCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTTG 112812319 Query 11006 TCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCC 11065 | ||| | |||| || || || | | || || || || |||||||| || Sbjct 112812320 GCCTTGGCCTTGTTGAAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACAAACATCTCG 112812379 Query 11066 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCG 11124 | || | || ||| ||| | || |||||| ||| || || ||||||||||| Sbjct 112812380 ATGAACTCGGACCCGG-ACAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTT 112812438 Query 11125 GGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || || |||||||||||||| || Sbjct 112812439 CGCCAGCAGCGTCTTCCCCGTCCCCGG 112812465 >seq3 Length=300915289 Score = 147 bits (162), Expect = 3e-30 Identities = 312/457 (68%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 250095623 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 250095682 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || |||||||| | ||| | || || ||| ||| | | |||| Sbjct 250095683 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTGTGCCCC--AGCGCCATGAGC 250095737 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| | | |||||| |||| ||| Sbjct 250095738 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGC 250095797 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| | ||| || || ||||| || ||||| Sbjct 250095798 GCGACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGAT 250095856 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048 || | | |||| | | | | |||| | | ||| | || ||| || ||| Sbjct 250095857 CTCGCGGACACGGTCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 250095913 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||||| |||||||| ||||||||||| || || |||||| || || || Sbjct 250095914 GAAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGG 250095973 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| || |||||||| | |||||| || || || || || |||||||||||||| || Sbjct 250095974 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 250096033 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || || ||||| || | ||| ||||| || ||| Sbjct 250096034 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 250096070 >seq5 Length=158699395 Score = 107 bits (118), Expect = 2e-18 Identities = 252/378 (67%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || |||| || |||||||| | ||||| || || || || ||| || | ||| Sbjct 85378077 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGTGCTGAGTCGAGCACATCTGGC 85378136 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| || | |||| || || | | | ||||||| |||||||||||| Sbjct 85378137 CTGTTAGTCGCAGCAAGCACAATGACACCGCTGTTGCCCGCAAAGCCGTCCATCTCAGTC 85378196 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 10953 ||||| || |||||||| || || | || || || | | | | || |||| || Sbjct 85378197 AAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 85378255 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||| ||||||||||| || || || || || | ||| Sbjct 85378256 CTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 85378315 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || |||| || ||||| || ||||| ||||| || || | || || || | Sbjct 85378316 CTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCGACGAAGAGCTCGACGAACTC 85378375 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || |||| || || ||| || ||| || || || |||| ||| ||||| | ||| Sbjct 85378376 GGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCGGCGACGGCACGGGCCAAGAG 85378435 Query 11134 GGTCTTCCCCGTCCCAGG 11151 ||| || || ||||| || Sbjct 85378436 GGTTTTACCAGTCCCGGG 85378453 Score = 96.9 bits (106), Expect = 4e-15 Identities = 193/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 || || ||||||||||||||||| ||||| |||| || || || | ||||||||| | Sbjct 71162821 TCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTCTGCTCCCTTTCATCATTTCCA 71162880 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | ||| | || | |||| ||||||| || ||||||||||| | || || || Sbjct 71162881 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 71162940 Query 10994 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || ||| | | || | ||| ||| | ||| || ||||| ||||| ||||| Sbjct 71162941 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 71162999 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111 |||||||| |||||||| | || | | ||| |||| || || || || | || | Sbjct 71163000 AACAAACATCTCCACAAACTCGGAGCCTGAA-ATTGAGAAAAATGGCACACCAGCCTCTC 71163058 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 |||| || || ||| || | || || || || |||||| Sbjct 71163059 CCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTCCAGGT 71163099 >seq8759 Length=1216561 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 115233 ||| ||||||||||| ||||| ||||| || ||||||| || || | ||| | || Sbjct 958199 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTG 958140 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293 ||||| || ||| |||| | | | | |||||||||| ||| || || | ||| Sbjct 958139 AGACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACCGA 958080 Query 115294 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 115353 |||| ||| | ||||| || || |||| | | | ||||||||| || |||||| Sbjct 958079 AACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCATCGAGCTTCAAGAGGTA 958020 Query 115354 ACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 | | |||||| ||||||| |||||| || | |||| ||||||| Sbjct 958019 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCGTAGTCGAAGTCCCT 957972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597201356968120