Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq5 102 7e-17
seq7 86.0 6e-12
seq6 84.2 2e-11
seq2 82.4 7e-11
>seq5
Length=158699395
Score = 102 bits (112), Expect = 7e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182
||||||| ||| || || || || || |||||||||||||| || ||| | ||| |
Sbjct 74943777 AGCCTCAGCACCAGGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGA 74943718
Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242
||| || | || || || ||| | || | || ||||||||||| || ||||| ||
Sbjct 74943717 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 74943658
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301
|| || || || || || | || | || | |||||| || |||||||| || || ||
Sbjct 74943657 TTGTCCTGGATCTTGGCCTTCA-CGTTATCGATGGTGTCAGAGGACTCGACCTCAAGTGT 74943599
Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| || |||||||| || || || ||||| || ||||||
Sbjct 74943598 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 74943559
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| | || || || || ||||| || || ||||| ||
Sbjct 71681535 ATGCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCA 71681594
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||| || ||||| ||| | || | || |||||||| ||
Sbjct 71681595 GCAAGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGT 71681654
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||||||||| |||||||| ||| ||| | || | ||||| ||||||||
Sbjct 71681655 GGGATGCCTTCTTTGTCTTGAATCTTTGCTTTCACATTATCAATTGTGTCAGAAGACTCA 71681714
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | || || || || ||||| || || || ||||||||
Sbjct 71681715 ACTTCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATTTGCAT 71681764
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182
||||||| ||| || || || || || |||||||||||||| || ||| | ||| |
Sbjct 74944005 AGCCTCAGCACCAGGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGA 74943946
Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242
||| || | || || || ||| | || | || ||||||||||| || ||||| ||
Sbjct 74943945 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 74943886
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301
|| || || || || || | || | || | |||||| || ||||| || || || ||
Sbjct 74943885 TTGTCCTGGATCTTGGCCTTCA-CGTTATCGATGGTGTCAGAGGACTCAACCTCAAGTGT 74943827
Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || |||||||| || || || ||||| || |||||
Sbjct 74943826 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 74943788
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| |||| || ||||| ||| | || | || |||||||| || || |||||||| ||
Sbjct 71676776 ATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCCTT 71676835
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| ||||| ||| ||| | || | |||||||||||||| ||||| || || |
Sbjct 71676836 GTCCTGAATCTTTGCTTTCACATTATCAATTGTGTCGGAAGACTCAACTTCAAGTGTGAT 71676895
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || ||||| || || || ||||||||
Sbjct 71676896 GGTCTTTCCCGTCAGAGTCTTCACGAAGATTTGCAT 71676931
>seq7
Length=154015841
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || | |||||| | ||| || ||||| || || ||||| |||||||| || ||
Sbjct 60356625 ATCCCACCCCTGAGCCTGAGCACAAGGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCA 60356684
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| ||| || | || || || || | || | || ||||||||||||
Sbjct 60356685 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGC 60356744
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || || || || || | || | |||||| || ||||||
Sbjct 60356745 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCG 60356804
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || ||||| || || || || || || || |||||
Sbjct 60356805 ACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 60356854
>seq6
Length=240577051
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| || || || || || ||||| ||||| || || ||
Sbjct 194679262 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 194679203
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| |||| || || || || | |||| || ||||||||||| |||
Sbjct 194679202 AGGGTGCGGCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 194679143
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || ||||| || || || || | || | || | |||||| || ||||| ||
Sbjct 194679142 ATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAAC 194679084
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || | || ||||| || || || ||||| || || |||||
Sbjct 194679083 TTCTAGTGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 194679036
>seq2
Length=243061704
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || || || || ||| ||| |||
Sbjct 229073793 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCATCCTCC 229073734
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | |||| || ||||||||||| || ||||| || || || ||
Sbjct 229073733 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 229073674
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || |||| || | ||||||||| |||||| || ||||| | || |||
Sbjct 229073673 ATCTTGGCCTTGACATTATCAATGGTGTCGGAGCTCTCGACCTCCAGAGTGATGGTCTTG 229073614
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| | || || ||||| || ||||||
Sbjct 229073613 CCGGTCAAGGTCTTCACAAAGATCTGCATC 229073584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451888001334440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |