Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 102 7e-17 seq7 86.0 6e-12 seq6 84.2 2e-11 seq2 82.4 7e-11 >seq5 Length=158699395 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||||| ||| || || || || || |||||||||||||| || ||| | ||| | Sbjct 74943777 AGCCTCAGCACCAGGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGA 74943718 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | || || || ||| | || | || ||||||||||| || ||||| || Sbjct 74943717 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 74943658 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || || || || || | || | || | |||||| || |||||||| || || || Sbjct 74943657 TTGTCCTGGATCTTGGCCTTCA-CGTTATCGATGGTGTCAGAGGACTCGACCTCAAGTGT 74943599 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || |||||||| || || || ||||| || |||||| Sbjct 74943598 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 74943559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| | || || || || ||||| || || ||||| || Sbjct 71681535 ATGCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCA 71681594 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| || ||||| ||| | || | || |||||||| || Sbjct 71681595 GCAAGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGT 71681654 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||||||||| |||||||| ||| ||| | || | ||||| |||||||| Sbjct 71681655 GGGATGCCTTCTTTGTCTTGAATCTTTGCTTTCACATTATCAATTGTGTCAGAAGACTCA 71681714 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || || || ||||| || || || |||||||| Sbjct 71681715 ACTTCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATTTGCAT 71681764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||||| ||| || || || || || |||||||||||||| || ||| | ||| | Sbjct 74944005 AGCCTCAGCACCAGGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGA 74943946 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | || || || ||| | || | || ||||||||||| || ||||| || Sbjct 74943945 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 74943886 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || || || || || | || | || | |||||| || ||||| || || || || Sbjct 74943885 TTGTCCTGGATCTTGGCCTTCA-CGTTATCGATGGTGTCAGAGGACTCAACCTCAAGTGT 74943827 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| || || || ||||| || ||||| Sbjct 74943826 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 74943788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || ||||| ||| | || | || |||||||| || || |||||||| || Sbjct 71676776 ATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCCTT 71676835 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||| ||| ||| | || | |||||||||||||| ||||| || || | Sbjct 71676836 GTCCTGAATCTTTGCTTTCACATTATCAATTGTGTCGGAAGACTCAACTTCAAGTGTGAT 71676895 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || || || |||||||| Sbjct 71676896 GGTCTTTCCCGTCAGAGTCTTCACGAAGATTTGCAT 71676931 >seq7 Length=154015841 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | ||| || ||||| || || ||||| |||||||| || || Sbjct 60356625 ATCCCACCCCTGAGCCTGAGCACAAGGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCA 60356684 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || || | || | || |||||||||||| Sbjct 60356685 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGC 60356744 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || || | || | |||||| || |||||| Sbjct 60356745 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCG 60356804 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || || || || || || ||||| Sbjct 60356805 ACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 60356854 >seq6 Length=240577051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| ||||| || || || Sbjct 194679262 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 194679203 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || || | |||| || ||||||||||| ||| Sbjct 194679202 AGGGTGCGGCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 194679143 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || ||||| || || || || | || | || | |||||| || ||||| || Sbjct 194679142 ATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAAC 194679084 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | || ||||| || || || ||||| || || ||||| Sbjct 194679083 TTCTAGTGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 194679036 >seq2 Length=243061704 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || || || ||| ||| ||| Sbjct 229073793 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCATCCTCC 229073734 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | |||| || ||||||||||| || ||||| || || || || Sbjct 229073733 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 229073674 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | ||||||||| |||||| || ||||| | || ||| Sbjct 229073673 ATCTTGGCCTTGACATTATCAATGGTGTCGGAGCTCTCGACCTCCAGAGTGATGGTCTTG 229073614 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | || || ||||| || |||||| Sbjct 229073613 CCGGTCAAGGTCTTCACAAAGATCTGCATC 229073584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451888001334440