Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2 159 4e-34
seq3 150 2e-31
seq8759 109 7e-19
seq5 104 3e-17
>seq2
Length=243061704
Score = 159 bits (176), Expect = 4e-34
Identities = 312/452 (69%), Gaps = 8/452 (2%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| ||||| ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 119860616 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 119860675
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGTTGGCACCCCAATCTGTTTGAGGAGA 127348
| || || ||||| | ||| | || ||||| ||||| | | | ||| ||
Sbjct 119860676 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTG-CACCCTAGTGCCAT-GAGCAGG 119860733
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 127407
|| || | |||| |||| |||||||| ||| | | |||||| |||| ||| |
Sbjct 119860734 CGGTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCG 119860793
Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467
|| ||||||||||| ||| |||| | ||| |||||||| || || ||||| |
Sbjct 119860794 ACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTC 119860852
Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAACT 127526
| | | | | | | | | |||| | || | |||| ||| || || |
Sbjct 119860853 GCGGACGCGGGACTCGTCGAGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCAC-GCGAAGT 119860911
Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586
| ||| || |||||||| ||||||||||| || || |||||| || || |||||||
Sbjct 119860912 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 119860971
Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| |
Sbjct 119860972 GCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 119861031
Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAG 127678
| || |||||||| | || |||||||| |||
Sbjct 119861032 CGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 119861063
Score = 127 bits (140), Expect = 3e-24
Identities = 364/552 (66%), Gaps = 6/552 (1%)
Strand=Plus/Plus
Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577
|||| |||| | ||| ||||||| ||| || | |||||| || | ||| || ||
Sbjct 112811917 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCAGCGCCGCT 112811976
Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637
||| || | || || | || | || ||| ||| || ||| ||||||||
Sbjct 112811977 GAACCCGGGGGTACGCATGGCCACCACGCTGAGCGACACGTCCGGGTCCAGCTTCTTGT- 112812035
Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696
| | || ||| || | | |||| ||| || |||||||| ||| ||| ||| |||
Sbjct 112812036 TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGGGGAGGCCGACGCTGA 112812095
Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756
|| || || ||||| || |||||||| || ||| |||| ||||| || ||||| |
Sbjct 112812096 CCTGGCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCGGGCCGGTTGG 112812155
Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816
| || ||||| || | || ||| | ||| ||| || |||||||| |||| || |
Sbjct 112812156 TGGCGGCGATCACGATGACGCCGCTGTCGCCGGAGAACCCGTCCATCTCCGTCAGCAGCT 112812215
Query 12817 GATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTA 12875
| |||| || || || | || || ||| || || | |||| | ||| ||
Sbjct 112812216 GGTTGAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATG-CCCGTCCCGCGCTGGCGG 112812274
Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935
||||||||||| | ||||| ||||| |||| ||||| || | ||| |
Sbjct 112812275 CCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 112812334
Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995
|||| || ||||| | | || || || || ||||||||||| | || | || ||
Sbjct 112812335 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACAAACATCTCGATGAACTCGGACCCG 112812394
Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054
| ||| | || |||||| ||| || || ||||||||||| || || || |||||
Sbjct 112812395 G-ACAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTT 112812453
Query 13055 CCCCGTCCCTGG 13066
||||||||| ||
Sbjct 112812454 CCCCGTCCCCGG 112812465
>seq3
Length=300915289
Score = 150 bits (166), Expect = 2e-31
Identities = 313/457 (68%), Gaps = 18/457 (4%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| |||||||| ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 250095623 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 250095682
Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345
| || |||||||| | ||| | || || ||| ||| | | ||||
Sbjct 250095683 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTGTGCCCC--AGCGCCATGAGC 250095737
Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404
|| || || | |||| |||| ||||||| ||| | | |||||| |||| |||
Sbjct 250095738 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGC 250095797
Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464
| || ||||||||||| ||| |||| | ||| ||||| || || || |||||
Sbjct 250095798 GCGACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGAT 250095856
Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521
|| | | | |||| | | | | |||| | | ||| | || ||| || ||
Sbjct 250095857 CTCGCGGACACGGTCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 250095913
Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581
|| || ||||| |||||||| ||||||||||| || || |||||| || || ||
Sbjct 250095914 GAAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGG 250095973
Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641
|||||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||
Sbjct 250095974 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 250096033
Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678
||| || || ||||| || | || |||||||| |||
Sbjct 250096034 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 250096070
>seq8759
Length=1216561
Score = 109 bits (120), Expect = 7e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194
||| ||||||||||| ||||| ||||| || ||||||| || || | ||| | ||
Sbjct 958199 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTG 958140
Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254
||||| || ||| |||| | | |||| |||||||||| ||| || || | ||
Sbjct 958139 AGACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACCGA 958080
Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314
|||| ||| | ||||| || || |||| | | | ||||||||| || ||||||
Sbjct 958079 AACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCATCGAGCTTCAAGAGGTA 958020
Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362
| | |||||| ||||||| |||||| ||| | |||| |||||||
Sbjct 958019 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCGTAGTCGAAGTCCCT 957972
>seq5
Length=158699395
Score = 104 bits (114), Expect = 3e-17
Identities = 155/216 (72%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848
||||| ||||||||||||||||| ||||| |||| || || || | ||||||||| |
Sbjct 71162821 TCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTCTGCTCCCTTTCATCATTTCCA 71162880
Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908
| ||| | || | |||| ||||||| || |||||||| |||| || || ||
Sbjct 71162881 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 71162940
Query 12909 CACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967
|| || ||| || ||| ||| ||| | ||| || ||||| ||||| |||||
Sbjct 71162941 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 71162999
Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG 13003
||||||||||||||||| | || | | ||| ||||
Sbjct 71163000 AACAAACATCTCCACAAACTCGGAGCCTGAA-ATTG 71163034
Score = 93.3 bits (102), Expect = 5e-14
Identities = 249/378 (66%), Gaps = 2/378 (1%)
Strand=Plus/Plus
Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749
|| |||| || |||||||| | ||||| || || || || ||| || | |||
Sbjct 85378077 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGTGCTGAGTCGAGCACATCTGGC 85378136
Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809
| ||| ||||| || | |||| || || | | | | ||||| ||||||||||||
Sbjct 85378137 CTGTTAGTCGCAGCAAGCACAATGACACCGCTGTTGCCCGCAAAGCCGTCCATCTCAGTC 85378196
Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 12868
||||| || |||||||| || || | || || || | | | | || |||| ||
Sbjct 85378197 AAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 85378255
Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928
||| | |||||||| ||||| || || ||||| || || || || || | |||
Sbjct 85378256 CTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 85378315
Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988
|| |||| || || || || ||||| ||||| || || | ||| || || |
Sbjct 85378316 CTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCGACGAAGAGCTCGACGAACTC 85378375
Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048
|| |||| || || ||| || ||| || || || |||| ||| ||||| | |||
Sbjct 85378376 GGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCGGCGACGGCACGGGCCAAGAG 85378435
Query 13049 GGTCTTCCCCGTCCCTGG 13066
||| || || ||||| ||
Sbjct 85378436 GGTTTTACCAGTCCCGGG 85378453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613350840021240
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