Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq3 150 2e-31 seq8759 109 7e-19 seq5 104 3e-17 >seq2 Length=243061704 Score = 159 bits (176), Expect = 4e-34 Identities = 312/452 (69%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 119860616 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 119860675 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| | ||| | || ||||| ||||| | | | ||| || Sbjct 119860676 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTGTTG-CACCCTAGTGCCAT-GAGCAGG 119860733 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 127407 || || | |||| |||| |||||||| ||| | | |||||| |||| ||| | Sbjct 119860734 CGGTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCG 119860793 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || ||||||||||| ||| |||| | ||| |||||||| || || ||||| | Sbjct 119860794 ACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTC 119860852 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAACT 127526 | | | | | | | | | |||| | || | |||| ||| || || | Sbjct 119860853 GCGGACGCGGGACTCGTCGAGCTTGCTGCGGAGGAGCTCGTAGAGGAGGCAC-GCGAAGT 119860911 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| || |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 119860912 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 119860971 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| | Sbjct 119860972 GCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 119861031 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || |||||||| | || |||||||| ||| Sbjct 119861032 CGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 119861063 Score = 127 bits (140), Expect = 3e-24 Identities = 364/552 (66%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| ||||||| ||| || | |||||| || | ||| || || Sbjct 112811917 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCAGCGCCGCT 112811976 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | || || | || | || ||| ||| || ||| |||||||| Sbjct 112811977 GAACCCGGGGGTACGCATGGCCACCACGCTGAGCGACACGTCCGGGTCCAGCTTCTTGT- 112812035 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| ||| || |||||||| ||| ||| ||| ||| Sbjct 112812036 TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGGGGAGGCCGACGCTGA 112812095 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| |||| ||||| || ||||| | Sbjct 112812096 CCTGGCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCGGGCCGGTTGG 112812155 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || ||||| || | || ||| | ||| ||| || |||||||| |||| || | Sbjct 112812156 TGGCGGCGATCACGATGACGCCGCTGTCGCCGGAGAACCCGTCCATCTCCGTCAGCAGCT 112812215 Query 12817 GATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTA 12875 | |||| || || || | || || ||| || || | |||| | ||| || Sbjct 112812216 GGTTGAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATG-CCCGTCCCGCGCTGGCGG 112812274 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| | ||||| ||||| |||| ||||| || | ||| | Sbjct 112812275 CCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 112812334 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 |||| || ||||| | | || || || || ||||||||||| | || | || || Sbjct 112812335 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACAAACATCTCGATGAACTCGGACCCG 112812394 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 | ||| | || |||||| ||| || || ||||||||||| || || || ||||| Sbjct 112812395 G-ACAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTT 112812453 Query 13055 CCCCGTCCCTGG 13066 ||||||||| || Sbjct 112812454 CCCCGTCCCCGG 112812465 >seq3 Length=300915289 Score = 150 bits (166), Expect = 2e-31 Identities = 313/457 (68%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 250095623 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 250095682 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || |||||||| | ||| | || || ||| ||| | | |||| Sbjct 250095683 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTGTGCCCC--AGCGCCATGAGC 250095737 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| | | |||||| |||| ||| Sbjct 250095738 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGC 250095797 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| | ||| ||||| || || || ||||| Sbjct 250095798 GCGACG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGAT 250095856 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521 || | | | |||| | | | | |||| | | ||| | || ||| || || Sbjct 250095857 CTCGCGGACACGGTCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 250095913 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||||| |||||||| ||||||||||| || || |||||| || || || Sbjct 250095914 GAAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGG 250095973 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| || |||||||| | |||||| || || || || ||||| ||||||||||| || Sbjct 250095974 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 250096033 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| || || ||||| || | || |||||||| ||| Sbjct 250096034 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 250096070 >seq8759 Length=1216561 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||| ||||||||||| ||||| ||||| || ||||||| || || | ||| | || Sbjct 958199 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTG 958140 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||| || ||| |||| | | |||| |||||||||| ||| || || | || Sbjct 958139 AGACATGAGATGGTAAGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACCGA 958080 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 |||| ||| | ||||| || || |||| | | | ||||||||| || |||||| Sbjct 958079 AACCCTCATTAGCATGTGCTGTGGCCTTTCAACAACCTTCCCATCGAGCTTCAAGAGGTA 958020 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 | | |||||| ||||||| |||||| ||| | |||| ||||||| Sbjct 958019 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCGTAGTCGAAGTCCCT 957972 >seq5 Length=158699395 Score = 104 bits (114), Expect = 3e-17 Identities = 155/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 ||||| ||||||||||||||||| ||||| |||| || || || | ||||||||| | Sbjct 71162821 TCGAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTCTGCTCCCTTTCATCATTTCCA 71162880 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| | || | |||| ||||||| || |||||||| |||| || || || Sbjct 71162881 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 71162940 Query 12909 CACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || ||| || ||| ||| ||| | ||| || ||||| ||||| ||||| Sbjct 71162941 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 71162999 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG 13003 ||||||||||||||||| | || | | ||| |||| Sbjct 71163000 AACAAACATCTCCACAAACTCGGAGCCTGAA-ATTG 71163034 Score = 93.3 bits (102), Expect = 5e-14 Identities = 249/378 (66%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 || |||| || |||||||| | ||||| || || || || ||| || | ||| Sbjct 85378077 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGTGCTGAGTCGAGCACATCTGGC 85378136 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| || | |||| || || | | | | ||||| |||||||||||| Sbjct 85378137 CTGTTAGTCGCAGCAAGCACAATGACACCGCTGTTGCCCGCAAAGCCGTCCATCTCAGTC 85378196 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 12868 ||||| || |||||||| || || | || || || | | | | || |||| || Sbjct 85378197 AAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 85378255 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | |||||||| ||||| || || ||||| || || || || || | ||| Sbjct 85378256 CTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 85378315 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || |||| || || || || ||||| ||||| || || | ||| || || | Sbjct 85378316 CTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCGACGAAGAGCTCGACGAACTC 85378375 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || |||| || || ||| || ||| || || || |||| ||| ||||| | ||| Sbjct 85378376 GGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCGGCGACGGCACGGGCCAAGAG 85378435 Query 13049 GGTCTTCCCCGTCCCTGG 13066 ||| || || ||||| || Sbjct 85378436 GGTTTTACCAGTCCCGGG 85378453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613350840021240