Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 179 6e-40 seq2 167 4e-36 >seq3 Length=300915289 Score = 179 bits (198), Expect = 6e-40 Identities = 526/802 (66%), Gaps = 20/802 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||||||||| Sbjct 250095638 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAATGGGTT 250095697 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || || ||| |||| | ||| || || || || Sbjct 250095698 GGCGACGTTGTACATCTTCTTGTGCCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 250095757 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| ||||||||||| || | Sbjct 250095758 GATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 250095817 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | ||||| ||| || || || || |||| || |||| ||| |||||| || | Sbjct 250095818 GACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGATCTCGCG-GACACGGTCCTCGT 250095876 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||||| | | |||| | | |||||||| || |||||||| || || |||| Sbjct 250095877 CGAGCTTGCTGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAATGGAGGCCCT 250095933 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | |||| |||||||||| || ||| |||| Sbjct 250095934 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGA 250095993 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 250095994 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCG 250096052 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | |||| | ||||||| || || Sbjct 250096053 ACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 250096108 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| ||| ||||||||| || | | ||||| ||| Sbjct 250096109 C----TTGCGGCGCACGGCGGGGATGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCGG 250096164 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 |||| ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 250096165 CGCCATCGCGGATGTACGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGA 250096224 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| |||||| ||| || || |||| | Sbjct 250096225 TGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGACCTGGACGTCGGACATGAAGC 250096284 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | || || | || | ||||||| ||| || ||||| || | |||||||| Sbjct 250096285 GGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGAG 250096344 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 ||||||| || | |||||| ||| ||| | |||||||| | |||| || | Sbjct 250096345 AGATGAAGTGGCGCTCGTCGTTGGAGAGCGCCGCGTCCCAGTGGCGCGCGTCGGCGGAGA 250096404 Query 160422 AATCAACCTCTTCCGCGCTCCA 160443 |||||||| || || |||| Sbjct 250096405 GGTCAACCTCCTCGGCCGTCCA 250096426 >seq2 Length=243061704 Score = 167 bits (184), Expect = 4e-36 Identities = 528/806 (66%), Gaps = 28/806 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 119860631 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTT 119860690 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| || ||| | || || ||| |||| | ||| || || || || Sbjct 119860691 GGCGGCGTTGTACATCTTGTTGCACCCTAGTGCCATGAGCAGGCGGTCGGCGACGAACTC 119860750 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| ||||||||||| || | Sbjct 119860751 GATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 119860810 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || || || || |||| || |||| ||| ||| || |||| Sbjct 119860811 GACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 119860869 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||||| | | | || | | ||||||||||| |||||||||||||| | Sbjct 119860870 ---CGAGCTTGCTGCGGAGGAGCTCGT---AGAGGAGGCACGCGAAGTCGCAGTGCAGGC 119860923 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| | Sbjct 119860924 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCTCGCTTCT 119860983 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || ||| Sbjct 119860984 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAC 119861042 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||| | ||| | || ||| | | | | | |||||| ||||||| || Sbjct 119861043 GCGACGAGTCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCACCGCATGGCCCAGTC 119861098 Query 160123 AGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| | ||||| | | |||| |||| || | | ||||| || Sbjct 119861099 CGCC----TTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAAAGGCGGTCCTTCT 119861154 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| ||| | | |||| ||||||||| || | ||| | || | Sbjct 119861155 CGGCGCCGTCGCGGATGTAAGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 119861214 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| |||||| ||||| |||||| || ||| Sbjct 119861215 CGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGCACGTCGGACATGA 119861274 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 | | ||| | || || | || | ||||||| ||| || ||||| |||| ||| Sbjct 119861275 AGC-GCGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCCAGGACG 119861333 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || |||||||| || | |||||| | ||| || |||||||| |||| | Sbjct 119861334 TGGGAGATGAAGTGGCGCTCGTCAGGGGAGAGGGACTCGTCCCAGTGGCGGGCGTCGGCG 119861393 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCA 160443 | || || |||||||| || |||| Sbjct 119861394 GACAGGTCCACCTCTTCGGCCGTCCA 119861419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794952544757840