Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 >seq2 Length=243061704 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||| || | |||| || || || ||||| ||||| ||| Sbjct 233057478 CCACCACGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCC 233057419 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | |||||||||||| | ||| Sbjct 233057418 AGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCGGGGGGA 233057359 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| | || || | || |||| | |||||| | ||| || | Sbjct 233057358 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATTGTGTCAGAGCTCTCAA 233057301 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| ||| || || || || || || || || || ||||||||||| Sbjct 233057300 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 233057252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347283281802437