Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7 127 8e-24 seq1 118 4e-21 seq4 102 3e-16 seq2 89.7 2e-12 >seq7 Length=154015841 Score = 127 bits (140), Expect = 8e-24 Identities = 247/364 (68%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||||||||||| ||||||||||||| || ||| || | || ||| || |||| Sbjct 100679629 GAAGAAATTTCTTCTATGGTTCTTATCAAGATGCGCGAGATTGCTGAAGCTTACCTTGGA 100679688 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | | | |||| || |||||||||| ||||| || |||||| | || |||| Sbjct 100679689 TCAACCATAAAGAATGCTGTGGTTACTGTTCCTGCTTACTTTAATGATTCCCAGAGGCAG 100679748 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 |||||||| ||||| || |||||| || | ||||| | || || || ||||| || Sbjct 100679749 GCAACTAAGGATGCTGGTGTTATTGCCGGGCTCAATGTCATGCGTATCATCAATGAGCCA 100679808 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-----GAAGaaaaaa 451481 || || ||||| | || ||||| || | | | ||| | || | || || | Sbjct 100679809 ACTGCTGCTGCAATTGCCTATGGTCTTG--ACAAGAAAGCTACCAGTGTTGGCGAGAAGA 100679866 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 || | | | ||||| ||||||| || ||| |||| ||| |||| | ||||| | Sbjct 100679867 ATGTCCTTATTTTTGACCTTGGTGGCGGCACTTTTGATGTCTCTCTACTCACCATTGAGG 100679926 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 | || ||||||| || ||||| || |||||| ||||| || || || || || ||| Sbjct 100679927 AGGGTATATTTGAGGTGAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTG 100679986 Query 451602 ATAA 451605 | || Sbjct 100679987 ACAA 100679990 Score = 104 bits (114), Expect = 9e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||||| || ||||||||| || |||| | || | | ||||| || Sbjct 150135016 ACCAAGATGAAGGAGACAGCAGAAGCTTACCTTGGAAAATCTGTCTCGAAGGCAGTGATC 150134957 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || || ||||||||||| || || || | || |||||||| |||| ||| Sbjct 150134956 ACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGTCCACAAAAGATGCTGGACGAATT 150134897 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | ||| |||| || ||||||||||||||||||||||| | |||||| Sbjct 150134896 GCTGGCCTTGAGGTTGAAAGAATAATCAATGAACCTACAGCAGCTGCTCTGTCCTATGGA 150134837 Score = 96.9 bits (106), Expect = 1e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 ||||| |||| || |||||| | |||||||||||||||||||| ||||||||||| ||| Sbjct 100680352 GGAAAGGAACTTTGCAAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTT 100680411 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGAT 452086 || || ||||| || | || | |||| || | || |||| | | ||| Sbjct 100680412 CAGGCTGCTATCCTTAGTGGCGAGGGCAATGAGAAGGTTCAGGACCTTCTCCTCCTCGAT 100680471 Query 452087 GTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || || || || |||||||| ||||||| || || ||| | |||||| Sbjct 100680472 GTGACCCCACTGTCTCTTGGTCTTGAAACCGCCGGAGGAGTCATGACT 100680519 >seq1 Length=275477322 Score = 118 bits (130), Expect = 4e-21 Identities = 252/375 (67%), Gaps = 11/375 (3%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| ||||||| || || ||||||||||| | || |||| || | |||||| | Sbjct 571222 TTTGCAGCTGAAGAGATCTCCTCTATGGTTCTCATCAAGATGAGGGAGATTGCAGAAGCA 571163 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || |||| | | | | |||| || | |||||||| || || |||||||| | Sbjct 571162 TACCTTGGCACAGCTATCAAGAATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCT 571103 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || |||| || || || ||||| || ||||||||| | |||||| | || || || Sbjct 571102 CAGAGGCAGGCCACCAAGGATGCTGGGGTGATTGCTGGTCTCAATGTTTTGCGTATCATC 571043 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAG--AAACA---- 451471 || || || || || |||||| | || ||||| || | || | ||| | || Sbjct 571042 AACGAGCCAACTGCTGCTGCTATTGCTTATGGTCTTG----ATAAGAAGGCTACCAGCGT 570987 Query 451472 -GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 | || || ||| || | | ||||| |||| || || ||| |||| ||| | || Sbjct 570986 TGGTGAGAAGAATGTTCTTATCTTTGACCTTGGAGGCGGTACTTTTGATGTCTCTCTCCT 570927 Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 | || || || || | ||||| || ||||| || |||||| |||||||| || || Sbjct 570926 CACCATCGAGGAGGGTATCTTTGAGGTCAAGGCTACTGCTGGTGACACTCATCTTGGTGG 570867 Query 451591 TGAAGATATTGATAA 451605 ||| || ||||||| Sbjct 570866 TGAGGACTTTGATAA 570852 Score = 100 bits (110), Expect = 1e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||||||||| || ||||||||||| |||| |||| ||| ||||| || || || Sbjct 259286038 CCTGAAGAAATCTCTTCTATGGTTCTCGCTAAGATGAGAGACACAGCTGAGATTTACCTT 259285979 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 ||| |||| | |||| || || ||||| || | ||||||||||| || || || Sbjct 259285978 GGTAAAACAGTCAAGAATGCTGTCATCACTGTCCCTGTCTATTTCAATGACGCCCAGCGC 259285919 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 | || || | || || || ||| || ||||| ||||| | || || || ||||| Sbjct 259285918 AAGGCTACCATTGACGCTGGTACTATGGCCGGTTTGAATGTCATGCGTATCATCAATGAG 259285859 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAA 451458 || || || || || || || ||||| || | ||| Sbjct 259285858 CCAACCGCTGCCGCCCTTGCCTATGGTCTCGAAAA 259285824 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| |||||||||||||| ||||| || |||||| |||||||| Sbjct 180517712 GCTGTGATCACAGTTCCTGCTTATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 180517653 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| | | | ||||| || ||||| ||||| || ||||| || | ||| Sbjct 180517652 GGCAGAATTGCCGCGCTGGAGGTTCTGCGTATTATAAATGAGCCAACAGCGGCATCGCTA 180517593 Query 451442 GCATATGG 451449 |||||||| Sbjct 180517592 GCATATGG 180517585 >seq4 Length=191835039 Score = 102 bits (112), Expect = 3e-16 Identities = 249/374 (67%), Gaps = 9/374 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 |||||| ||||||| || |||||||||||||| | || |||| || | || ||| Sbjct 12916142 TTTGCTGCTGAAGAGATCTCATCTATGGTTCTGATCAAGATGAGGGAGATTGCTGAAGCC 12916201 Query 451298 TATATTGG-TTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356 || |||| | ||| | | |||| || | || ||||| || || ||||| || | Sbjct 12916202 TACCTTGGCAGCACCA-TCAAGAATGCTGTTGTCACAGTTCCTGCCTACTTCAACGACTC 12916260 Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416 ||| |||| || || || ||||| ||| || ||||| | || ||||| || || || Sbjct 12916261 ACAGAGGCAGGCCACCAAGGATGCTGGAGTGATCGCTGGACTCAACGTTCTGCGTATCAT 12916320 Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA----- 451471 ||||| ||||| || |||||| | || ||||| || | | | || | || Sbjct 12916321 CAATGAGCCTACTGCTGCTGCTATTGCCTATGGTCTTG--ACAAGAAGGCTACCAGTGTT 12916378 Query 451472 GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTT 451531 | || || ||| | | | |||||| | || || || || |||| || | || Sbjct 12916379 GGTGAGAAGAATGTCCTCATCTTTGATCTGGGAGGTGGTACCTTTGATGTCTCCCTCCTC 12916438 Query 451532 TCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGT 451591 | ||||| || || | ||||| || ||||| || |||||| |||||||| || ||| Sbjct 12916439 ACCATTGAGGAAGGTATCTTTGAGGTCAAGGCCACTGCTGGTGACACTCATCTTGGTGGT 12916498 Query 451592 GAAGATATTGATAA 451605 || || |||| || Sbjct 12916499 GAGGACTTTGACAA 12916512 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||||| || || || || || || ||||| || || || ||| Sbjct 68254005 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 68254064 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || ||| || || || |||||||||||||||||||| || Sbjct 68254065 GATACGATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 68254124 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || || ||||| ||||| | || | || ||||| || Sbjct 68254125 CAGCGCCTTATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGTACGCTTGCAGATTACAAC 68254184 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| | || || ||| Sbjct 68254185 ATTCAAAAGGAGTCCACCCTGCAC 68254208 >seq2 Length=243061704 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||||||||| || ||||| ||||| || || || || || || || ||||| Sbjct 39807110 GCGGTGATTACTGTTCCAGCCTATTTTAATGACGCTCAGCGTCAGGCCACAAAGGATGCT 39807169 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | ||||| | || || |||||||| |||||||||||||| Sbjct 39807170 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 39807229 Query 451442 GCATATGGA 451450 | |||||| Sbjct 39807230 TCTTATGGA 39807238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975202275056012