Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq7 127 8e-24
seq1 118 4e-21
seq4 102 3e-16
seq2 89.7 2e-12
>seq7
Length=154015841
Score = 127 bits (140), Expect = 8e-24
Identities = 247/364 (68%), Gaps = 7/364 (2%)
Strand=Plus/Plus
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306
||||||||||| ||||||||||||| || ||| || | || ||| || ||||
Sbjct 100679629 GAAGAAATTTCTTCTATGGTTCTTATCAAGATGCGCGAGATTGCTGAAGCTTACCTTGGA 100679688
Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366
|| | | | |||| || |||||||||| ||||| || |||||| | || ||||
Sbjct 100679689 TCAACCATAAAGAATGCTGTGGTTACTGTTCCTGCTTACTTTAATGATTCCCAGAGGCAG 100679748
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|||||||| ||||| || |||||| || | ||||| | || || || ||||| ||
Sbjct 100679749 GCAACTAAGGATGCTGGTGTTATTGCCGGGCTCAATGTCATGCGTATCATCAATGAGCCA 100679808
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-----GAAGaaaaaa 451481
|| || ||||| | || ||||| || | | | ||| | || | || || |
Sbjct 100679809 ACTGCTGCTGCAATTGCCTATGGTCTTG--ACAAGAAAGCTACCAGTGTTGGCGAGAAGA 100679866
Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541
|| | | | ||||| ||||||| || ||| |||| ||| |||| | ||||| |
Sbjct 100679867 ATGTCCTTATTTTTGACCTTGGTGGCGGCACTTTTGATGTCTCTCTACTCACCATTGAGG 100679926
Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601
| || ||||||| || ||||| || |||||| ||||| || || || || || |||
Sbjct 100679927 AGGGTATATTTGAGGTGAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTG 100679986
Query 451602 ATAA 451605
| ||
Sbjct 100679987 ACAA 100679990
Score = 104 bits (114), Expect = 9e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330
|| || ||||| || ||||||||| || |||| | || | | ||||| ||
Sbjct 150135016 ACCAAGATGAAGGAGACAGCAGAAGCTTACCTTGGAAAATCTGTCTCGAAGGCAGTGATC 150134957
Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390
|||||||| || || ||||||||||| || || || | || |||||||| |||| |||
Sbjct 150134956 ACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGTCCACAAAAGATGCTGGACGAATT 150134897
Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450
||||| | | ||| |||| || ||||||||||||||||||||||| | ||||||
Sbjct 150134896 GCTGGCCTTGAGGTTGAAAGAATAATCAATGAACCTACAGCAGCTGCTCTGTCCTATGGA 150134837
Score = 96.9 bits (106), Expect = 1e-14
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026
||||| |||| || |||||| | |||||||||||||||||||| ||||||||||| |||
Sbjct 100680352 GGAAAGGAACTTTGCAAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTT 100680411
Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGAT 452086
|| || ||||| || | || | |||| || | || |||| | | |||
Sbjct 100680412 CAGGCTGCTATCCTTAGTGGCGAGGGCAATGAGAAGGTTCAGGACCTTCTCCTCCTCGAT 100680471
Query 452087 GTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134
|| || || || |||||||| ||||||| || || ||| | ||||||
Sbjct 100680472 GTGACCCCACTGTCTCTTGGTCTTGAAACCGCCGGAGGAGTCATGACT 100680519
>seq1
Length=275477322
Score = 118 bits (130), Expect = 4e-21
Identities = 252/375 (67%), Gaps = 11/375 (3%)
Strand=Plus/Minus
Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297
||||| ||||||| || || ||||||||||| | || |||| || | |||||| |
Sbjct 571222 TTTGCAGCTGAAGAGATCTCCTCTATGGTTCTCATCAAGATGAGGGAGATTGCAGAAGCA 571163
Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357
|| |||| | | | | |||| || | |||||||| || || |||||||| |
Sbjct 571162 TACCTTGGCACAGCTATCAAGAATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCT 571103
Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417
|| |||| || || || ||||| || ||||||||| | |||||| | || || ||
Sbjct 571102 CAGAGGCAGGCCACCAAGGATGCTGGGGTGATTGCTGGTCTCAATGTTTTGCGTATCATC 571043
Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAG--AAACA---- 451471
|| || || || || |||||| | || ||||| || | || | ||| | ||
Sbjct 571042 AACGAGCCAACTGCTGCTGCTATTGCTTATGGTCTTG----ATAAGAAGGCTACCAGCGT 570987
Query 451472 -GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530
| || || ||| || | | ||||| |||| || || ||| |||| ||| | ||
Sbjct 570986 TGGTGAGAAGAATGTTCTTATCTTTGACCTTGGAGGCGGTACTTTTGATGTCTCTCTCCT 570927
Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590
| || || || || | ||||| || ||||| || |||||| |||||||| || ||
Sbjct 570926 CACCATCGAGGAGGGTATCTTTGAGGTCAAGGCTACTGCTGGTGACACTCATCTTGGTGG 570867
Query 451591 TGAAGATATTGATAA 451605
||| || |||||||
Sbjct 570866 TGAGGACTTTGATAA 570852
Score = 100 bits (110), Expect = 1e-15
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
||||||||||| || ||||||||||| |||| |||| ||| ||||| || || ||
Sbjct 259286038 CCTGAAGAAATCTCTTCTATGGTTCTCGCTAAGATGAGAGACACAGCTGAGATTTACCTT 259285979
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
||| |||| | |||| || || ||||| || | ||||||||||| || || ||
Sbjct 259285978 GGTAAAACAGTCAAGAATGCTGTCATCACTGTCCCTGTCTATTTCAATGACGCCCAGCGC 259285919
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
| || || | || || || ||| || ||||| ||||| | || || || |||||
Sbjct 259285918 AAGGCTACCATTGACGCTGGTACTATGGCCGGTTTGAATGTCATGCGTATCATCAATGAG 259285859
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAA 451458
|| || || || || || || ||||| || | |||
Sbjct 259285858 CCAACCGCTGCCGCCCTTGCCTATGGTCTCGAAAA 259285824
Score = 87.8 bits (96), Expect = 7e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || || || ||||| |||||||||||||| ||||| || |||||| ||||||||
Sbjct 180517712 GCTGTGATCACAGTTCCTGCTTATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 180517653
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| ||||| | | | ||||| || ||||| ||||| || ||||| || | |||
Sbjct 180517652 GGCAGAATTGCCGCGCTGGAGGTTCTGCGTATTATAAATGAGCCAACAGCGGCATCGCTA 180517593
Query 451442 GCATATGG 451449
||||||||
Sbjct 180517592 GCATATGG 180517585
>seq4
Length=191835039
Score = 102 bits (112), Expect = 3e-16
Identities = 249/374 (67%), Gaps = 9/374 (2%)
Strand=Plus/Plus
Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297
|||||| ||||||| || |||||||||||||| | || |||| || | || |||
Sbjct 12916142 TTTGCTGCTGAAGAGATCTCATCTATGGTTCTGATCAAGATGAGGGAGATTGCTGAAGCC 12916201
Query 451298 TATATTGG-TTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356
|| |||| | ||| | | |||| || | || ||||| || || ||||| || |
Sbjct 12916202 TACCTTGGCAGCACCA-TCAAGAATGCTGTTGTCACAGTTCCTGCCTACTTCAACGACTC 12916260
Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416
||| |||| || || || ||||| ||| || ||||| | || ||||| || || ||
Sbjct 12916261 ACAGAGGCAGGCCACCAAGGATGCTGGAGTGATCGCTGGACTCAACGTTCTGCGTATCAT 12916320
Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA----- 451471
||||| ||||| || |||||| | || ||||| || | | | || | ||
Sbjct 12916321 CAATGAGCCTACTGCTGCTGCTATTGCCTATGGTCTTG--ACAAGAAGGCTACCAGTGTT 12916378
Query 451472 GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTT 451531
| || || ||| | | | |||||| | || || || || |||| || | ||
Sbjct 12916379 GGTGAGAAGAATGTCCTCATCTTTGATCTGGGAGGTGGTACCTTTGATGTCTCCCTCCTC 12916438
Query 451532 TCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGT 451591
| ||||| || || | ||||| || ||||| || |||||| |||||||| || |||
Sbjct 12916439 ACCATTGAGGAAGGTATCTTTGAGGTCAAGGCCACTGCTGGTGACACTCATCTTGGTGGT 12916498
Query 451592 GAAGATATTGATAA 451605
|| || |||| ||
Sbjct 12916499 GAGGACTTTGACAA 12916512
Score = 93.3 bits (102), Expect = 2e-13
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || ||||| || || || || || || ||||| || || || |||
Sbjct 68254005 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 68254064
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | | || ||| || || || |||||||||||||||||||| ||
Sbjct 68254065 GATACGATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 68254124
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || | || || | || || || ||||| ||||| | || | || ||||| ||
Sbjct 68254125 CAGCGCCTTATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGTACGCTTGCAGATTACAAC 68254184
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| | || || |||
Sbjct 68254185 ATTCAAAAGGAGTCCACCCTGCAC 68254208
>seq2
Length=243061704
Score = 89.7 bits (98), Expect = 2e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || ||||||||||| || ||||| ||||| || || || || || || || |||||
Sbjct 39807110 GCGGTGATTACTGTTCCAGCCTATTTTAATGACGCTCAGCGTCAGGCCACAAAGGATGCT 39807169
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | |||||||| | ||||| | || || |||||||| ||||||||||||||
Sbjct 39807170 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 39807229
Query 451442 GCATATGGA 451450
| ||||||
Sbjct 39807230 TCTTATGGA 39807238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975202275056012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |