Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 2e-32
seq3 149 8e-31
seq5 122 1e-22
seq6 91.5 2e-13
>seq2
Length=243061704
Score = 154 bits (170), Expect = 2e-32
Identities = 123/148 (83%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
||| || ||||||||| |||| || || || || ||||| ||||||||||| || |||||
Sbjct 119861063 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 119861004
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
|||||| || | ||||||||||||||||| |||||||| || ||| ||||||||||||
Sbjct 119861003 CTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 119860944
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320
||| ||||| || |||||||| || |||
Sbjct 119860943 GCTCATCTCCCGCGACGAGGGCCTGCAC 119860916
>seq3
Length=300915289
Score = 149 bits (164), Expect = 8e-31
Identities = 121/147 (82%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
||| || ||||| ||| |||| || || || || ||||| ||||||||||| || |||||
Sbjct 250096070 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 250096011
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 250096010 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGA 250095951
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCA 102319
||| ||||| || |||||||| |||||
Sbjct 250095950 GCTCATCTCCCGCGACGAGGGCCTCCA 250095924
>seq5
Length=158699395
Score = 122 bits (134), Expect = 1e-22
Identities = 251/366 (69%), Gaps = 8/366 (2%)
Strand=Plus/Plus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
|||||||| || || | ||| | || ||| | ||| ||| | | || || || ||
Sbjct 71162737 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 71162796
Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005
|| |||| ||| || |||||| | | |||||||||||||| ||||| || ||||| |
Sbjct 71162797 ATAACAATAATTCCAGTGTTTCCCT--CGAAACCATCCATCTCAGTCAACAGTTGGTTGA 71162854
Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065
||| || |||| ||||||||| | | ||| | || | |||| | || || |
Sbjct 71162855 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 71162914
Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 16124
||||||| ||||||| || || ||||| || ||| | | | | ||| ||| |||
Sbjct 71162915 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 71162973
Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184
|| || || | || || ||||||||||||||||||||||| | | | | ||| ||
Sbjct 71162974 TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCGGAGCCTGAA-AT 71163032
Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243
|| || || || ||| || || |||||||| || ||| || | ||| ||||| ||
Sbjct 71163033 TGAGAAAAATGGCACACCAGCCTCTCCCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGT 71163092
Query 16244 ACCTGG 16249
|| ||
Sbjct 71163093 TCCAGG 71163098
>seq6
Length=240577051
Score = 91.5 bits (100), Expect = 2e-13
Identities = 304/459 (66%), Gaps = 13/459 (3%)
Strand=Plus/Minus
Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938
|||| ||||||||| | ||||| | || | || | || ||||| ||| | ||
Sbjct 33889000 ATCTGACGATCAAATCTCCCTGGTCTGAGCAAAGCCTTGTCTAGGATGTCAGGTCTGTTG 33888941
Query 15939 GTTGCGGCGATGACAACAATACCTGTT-TCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997
|| | || | ||||||| || | | | ||| |||| |||||||||||| | |
Sbjct 33888940 GTACCAGCAAGAACAACAACTCCAGATGTTGTTC-CAAATCCATCCATCTCTACAAGCAA 33888882
Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTG 16054
|||||| | || ||| || |||||||| | | | | || ||| || | |||
Sbjct 33888881 CTGGTTCAATGTGCTTTCACGCTCATCATTTCCCCCAGAGAATCCTCCACGACCCC-TTG 33888823
Query 16055 CTTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113
| ||| ||||| || ||||||||||| || || | ||| | || |||||
Sbjct 33888822 CACGACCAATTGCATCGATTTCATCAATGAATACAATACTAGGTGCACATTGTCGAGCTT 33888763
Query 16114 CTTCAAAGAGATCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172
||| ||| | | ||| || | | ||| || ||||||||||||||||||| |||| |
Sbjct 33888762 CTTGAAATAAGTTCCGCACCCTGGATGGT-CCAACACCAACAAACATCTCCATGAAGTCT 33888704
Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231
| ||||| || | | |||||| |||| |||||| || ||| | ||| || || ||
Sbjct 33888703 GAACCGGAA-ATAGACAAGAAGGGCACATCAGATTCTCCTGCAGTAGCTTTAGCAAGGAG 33888645
Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGC-GCCAC 16290
|| || |||||||| || ||| | || || ||||| ||| || || || |||
Sbjct 33888644 CGTTTTCCCCGTACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCCCAG 33888585
Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329
||| | ||| ||| || | ||| || |||| |||||
Sbjct 33888584 TTCTTCA-TATTTCTTGGGGTTCTTTAGGAAATGCACAA 33888547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620584196040080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |