Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq3 149 8e-31 seq5 122 1e-22 seq6 91.5 2e-13 >seq2 Length=243061704 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||||||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 119861063 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 119861004 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||||||||| |||||||| || ||| |||||||||||| Sbjct 119861003 CTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 119860944 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 119860943 GCTCATCTCCCGCGACGAGGGCCTGCAC 119860916 >seq3 Length=300915289 Score = 149 bits (164), Expect = 8e-31 Identities = 121/147 (82%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 250096070 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 250096011 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 250096010 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGA 250095951 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCA 102319 ||| ||||| || |||||||| ||||| Sbjct 250095950 GCTCATCTCCCGCGACGAGGGCCTCCA 250095924 >seq5 Length=158699395 Score = 122 bits (134), Expect = 1e-22 Identities = 251/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 71162737 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 71162796 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || |||| ||| || |||||| | | |||||||||||||| ||||| || ||||| | Sbjct 71162797 ATAACAATAATTCCAGTGTTTCCCT--CGAAACCATCCATCTCAGTCAACAGTTGGTTGA 71162854 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 ||| || |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 71162855 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 71162914 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 16124 ||||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||| Sbjct 71162915 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 71162973 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || | || || ||||||||||||||||||||||| | | | | ||| || Sbjct 71162974 TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCGGAGCCTGAA-AT 71163032 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || || ||| || || |||||||| || ||| || | ||| ||||| || Sbjct 71163033 TGAGAAAAATGGCACACCAGCCTCTCCCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGT 71163092 Query 16244 ACCTGG 16249 || || Sbjct 71163093 TCCAGG 71163098 >seq6 Length=240577051 Score = 91.5 bits (100), Expect = 2e-13 Identities = 304/459 (66%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| ||||||||| | ||||| | || | || | || ||||| ||| | || Sbjct 33889000 ATCTGACGATCAAATCTCCCTGGTCTGAGCAAAGCCTTGTCTAGGATGTCAGGTCTGTTG 33888941 Query 15939 GTTGCGGCGATGACAACAATACCTGTT-TCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 || | || | ||||||| || | | | ||| |||| |||||||||||| | | Sbjct 33888940 GTACCAGCAAGAACAACAACTCCAGATGTTGTTC-CAAATCCATCCATCTCTACAAGCAA 33888882 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTG 16054 |||||| | || ||| || |||||||| | | | | || ||| || | ||| Sbjct 33888881 CTGGTTCAATGTGCTTTCACGCTCATCATTTCCCCCAGAGAATCCTCCACGACCCC-TTG 33888823 Query 16055 CTTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 | ||| ||||| || ||||||||||| || || | ||| | || ||||| Sbjct 33888822 CACGACCAATTGCATCGATTTCATCAATGAATACAATACTAGGTGCACATTGTCGAGCTT 33888763 Query 16114 CTTCAAAGAGATCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 ||| ||| | | ||| || | | ||| || ||||||||||||||||||| |||| | Sbjct 33888762 CTTGAAATAAGTTCCGCACCCTGGATGGT-CCAACACCAACAAACATCTCCATGAAGTCT 33888704 Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | ||||| || | | |||||| |||| |||||| || ||| | ||| || || || Sbjct 33888703 GAACCGGAA-ATAGACAAGAAGGGCACATCAGATTCTCCTGCAGTAGCTTTAGCAAGGAG 33888645 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGC-GCCAC 16290 || || |||||||| || ||| | || || ||||| ||| || || || ||| Sbjct 33888644 CGTTTTCCCCGTACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCCCAG 33888585 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 ||| | ||| ||| || | ||| || |||| ||||| Sbjct 33888584 TTCTTCA-TATTTCTTGGGGTTCTTTAGGAAATGCACAA 33888547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620584196040080