Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 3e-17
seq3 98.7 1e-15
seq6 84.2 3e-11
>seq2
Length=243061704
Score = 104 bits (114), Expect = 3e-17
Identities = 174/249 (70%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || || |||||||| |||
Sbjct 119860917 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCT 119860976
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| |||||||| || || || || |||||||||||||| || |||
Sbjct 119860977 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 119861036
Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686
||||| |||| || ||||| || || | || | ||||| |||| | |||||
Sbjct 119861037 GCGAACGCGACGAGTCGCTCGGCGAAGCGCTCCCCGC-CGTCGATCCACCGCATGGCCCA 119861095
Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746
|| ||||| || | | |||||| || | |||||| |||||| | | ||| ||
Sbjct 119861096 GTCCGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAAAGGCGGTCCTTCTC 119861155
Query 119747 AGCACCATC 119755
|| || ||
Sbjct 119861156 GGCGCCGTC 119861164
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803
||||| ||| ||||||| |||||||||||| || |||||||||||||| || || ||
Sbjct 87112626 CGTCGACTGTATATGTTAGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGA 87112685
Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
||||||||| |||||||| ||||| | |||||| ||||| ||
Sbjct 87112686 CTAGTGGAAGCAGTGGGCATTGGAGCGACAAGAAGAGAGTTTCTGA 87112731
>seq3
Length=300915289
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566
||| || || || || || ||||||||||| || |||| || || |||||||| ||
Sbjct 250095923 ATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGGCC 250095982
Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
| ||||| ||||| |||||||| || || || || |||||||||||||| || ||
Sbjct 250095983 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 250096042
Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAA 119653
|||||| |||| || ||||| || ||
Sbjct 250096043 GGCGAAGGCGACGAGGCGCTCGGCGAA 250096069
>seq6
Length=240577051
Score = 84.2 bits (92), Expect = 3e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772
||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||
Sbjct 23363907 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 23363852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588825892104200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |