Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq3 98.7 1e-15 seq6 84.2 3e-11 >seq2 Length=243061704 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| ||| Sbjct 119860917 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCT 119860976 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 119860977 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 119861036 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | || | ||||| |||| | ||||| Sbjct 119861037 GCGAACGCGACGAGTCGCTCGGCGAAGCGCTCCCCGC-CGTCGATCCACCGCATGGCCCA 119861095 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 || ||||| || | | |||||| || | |||||| |||||| | | ||| || Sbjct 119861096 GTCCGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAAAGGCGGTCCTTCTC 119861155 Query 119747 AGCACCATC 119755 || || || Sbjct 119861156 GGCGCCGTC 119861164 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| |||||||||||| || |||||||||||||| || || || Sbjct 87112626 CGTCGACTGTATATGTTAGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGA 87112685 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||||||| |||||||| ||||| | |||||| ||||| || Sbjct 87112686 CTAGTGGAAGCAGTGGGCATTGGAGCGACAAGAAGAGAGTTTCTGA 87112731 >seq3 Length=300915289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||| || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 250095923 ATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGGCC 250095982 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | ||||| ||||| |||||||| || || || || |||||||||||||| || || Sbjct 250095983 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 250096042 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAA 119653 |||||| |||| || ||||| || || Sbjct 250096043 GGCGAAGGCGACGAGGCGCTCGGCGAA 250096069 >seq6 Length=240577051 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 23363907 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 23363852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588825892104200