Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 136 5e-27 seq2 118 1e-21 seq3 116 4e-21 seq6 93.3 5e-14 >seq5 Length=158699395 Score = 136 bits (150), Expect = 5e-27 Identities = 252/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 71162737 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 71162796 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || |||| ||| || |||||| | | |||||||||||||| ||||| |||||||| | Sbjct 71162797 ATAACAATAATTCCAGTGTTTCCCT--CGAAACCATCCATCTCAGTCAACAGTTGGTTGA 71162854 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 ||| || |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 71162855 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 71162914 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || || || || || ||| || ||| | | || |||| Sbjct 71162915 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGAT 71162974 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| || || || ||||||||||||||||||||||| | | | | ||| ||| Sbjct 71162975 CACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCGGAGCCTGAA-ATT 71163033 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || ||| || || |||||||| || ||| || | ||| ||||| || Sbjct 71163034 GAGAAAAATGGCACACCAGCCTCTCCCGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTT 71163093 Query 9552 CCTGG 9556 || || Sbjct 71163094 CCAGG 71163098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9339 |||| || |||||||| ||||| || ||||| || || || |||| || || || | Sbjct 85378177 CAAAGCCGTCCATCTCAGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTACCAC 85378236 Query 9340 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | ||||||| || ||| | || ||||||||||||||||| ||||||||||| Sbjct 85378237 CACCGAGC-CCAGCACCACGCTGCCTGCCGACGGCATCAATCTCATCGATGAAGACAATG 85378295 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || | ||| | || ||||| || || ||||| || |||||||| Sbjct 85378296 CAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCACGGACCCTGGATGCACCCACACCG 85378355 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 || || | ||| || || | | |||| || || ||| || || | || || Sbjct 85378356 ACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAAAGGCACGCCGGCCTCTCCG 85378415 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || | ||| ||||| | || || ||||| || || ||| || |||||| | || || Sbjct 85378416 GCGACGGCACGGGCCAAGAGGGTTTTACCAGTCCCGGGCGGGCCGACGAGGA-GACATCC 85378474 Query 9579 CGT-GGAATCTTGGCGCC 9595 | | || |||||||| || Sbjct 85378475 CTTGGGGATCTTGGCTCC 85378492 >seq2 Length=243061704 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 119860916 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 119860975 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 119860976 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 119861035 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | || |||||||||||| Sbjct 119861036 GGCGAACGCGACGAGTCGCTCGGCGAAG 119861063 >seq3 Length=300915289 Score = 116 bits (128), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 250095924 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGGCCG 250095983 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 250095984 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 250096043 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 250096044 GCGAAGGCGACGAGGCGCTCGGCGAAG 250096070 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||| | ||| |||||||| | |||||| ||||| || || || | |||||| || | Sbjct 562803 TGGTAAGGCAATTGATGCTAGATTGCATACAGCAGTTTCTTCAGGACTTGTGTATTCAAT 562744 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 || || ||||||||||||||| |||||| || || | ||| | ||||||||| ||| | Sbjct 562743 TATCTCAGTACACAAGTTGGAAGACTTAATTGTGCCAAGATTTTGTTGGTTACTTTTTCT 562684 Query 106576 GTTGCACGCATCCT 106589 |||||| ||||| Sbjct 562683 GTTGCAACTATCCT 562670 >seq6 Length=240577051 Score = 93.3 bits (102), Expect = 5e-14 Identities = 184/267 (69%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||| || ||||||||||| ||||||| ||| | || || || || ||| | Sbjct 33888811 GCATCGATTTCATCAATGAATACAATACTAGGTGCACATTGTCGAGCTTCTTGAAATAAG 33888752 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 | || ||||| | || ||||||||||||||||||| |||| || ||||| || Sbjct 33888751 TTCCGCACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAGTCTGAACCGGAA-AT 33888693 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | | |||||| |||| |||||| || ||| | ||| || || || || || ||||| Sbjct 33888692 AGACAAGAAGGGCACATCAGATTCTCCTGCAGTAGCTTTAGCAAGGAGCGTTTTCCCCGT 33888633 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGC-GCCACTTCCAAAGTATC 9609 ||| || ||| | || || |||||| ||| || || || ||| ||| | ||| Sbjct 33888632 ACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCCCAGTTCTTCA-TATT 33888574 Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAA 9636 ||| || | ||| || |||| ||||| Sbjct 33888573 TCTTGGGGTTCTTTAGGAAATGCACAA 33888547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589830436018360