Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq8759 87.8 2e-12 >seq2 Length=243061704 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| | || | |||||| || ||||| ||| Sbjct 87114657 CCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTAACATAGGAACAATTCCA 87114716 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| |||| | ||||| || ||| Sbjct 87114717 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 87114776 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | |||||| || || |||||||||||| Sbjct 87114777 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCCTTCAGAGTATCATAAATT 87114836 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 87114837 CCCTCAATGCTGTCATCTTTCAT 87114859 >seq8759 Length=1216561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | |||||| || ||||||||| Sbjct 958508 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATACCA 958449 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| ||||| ||||| ||| ||||| ||| |||| | || || || || Sbjct 958448 TTTGATGCTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATGTTGTGAACCGAG 958389 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | |||||| || || || || || ||| Sbjct 958388 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCGTAGATT 958329 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 958328 CCCTCAATGCTGTCATCTTTCAT 958306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561965539545960