Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-20 seq1 116 3e-20 seq4 107 2e-17 seq2 102 7e-16 seq13230 98.7 8e-15 seq5 95.1 1e-13 seq6 89.7 4e-12 >seq7 Length=154015841 Score = 116 bits (128), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || || || || ||||| ||||||| ||||||||| | || || ||| | | || Sbjct 100679614 AAGCAGTTCTCTGCAGAAGAAATTTCTTCTATGGTTCTTATCAAGATGCGCGAGATTGCT 100679673 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| |||| |||| | | | | |||| || | ||||| || || || ||||| Sbjct 100679674 GAAGCTTACCTTGGATCAACCA-TAAAGAATGCTGTGGTTACTGTTCCTGCTTACTTTAA 100679732 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||| |||||||| |||||| || || ||||| | || Sbjct 100679733 TGATTCCCAGAGGCAGGCAACTAAGGATGCTGGTGTTATTGCCGGGCTCAATGTCATGCG 100679792 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| |||||||| || |||||||||||| |||| ||||| ||||| || Sbjct 100679793 TATCATCAATGAGCCAACTGCTGCTGCAATTGCCTATGGTCTTGACAA 100679840 Score = 113 bits (124), Expect = 4e-19 Identities = 336/511 (66%), Gaps = 8/511 (2%) Strand=Plus/Plus Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 || ||| | ||||| ||||| || || ||||| |||| || |||||||| || || Sbjct 100680250 AGGGATGCCAAGATGGATAAGAGCACTGTCCATGATGTTGTCCTCGTTGGTGGTTCGACT 100680309 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 || || || ||| | | | |||| || ||| || |||||| || || | || Sbjct 100680310 AGGATCCCCAAAGTCCAGCAGCTGTTGCAGGACTTCTT-CAATGGAAAGGAACTT--TGC 100680366 Query 552203 AAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 ||| | | ||||| ||||| ||||||||||||||||| || |||| || ||||| ||| Sbjct 100680367 AAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTTCAGGCTGCTATCCTT 100680426 Query 552261 TCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320 ||| | |||| || | || | || | || | ||||| || || || ||| Sbjct 100680427 AGTGGCGAGGGCAATGAGAAGGTTCAGGACCTTCTCCTCCTCGATGTGACCCCACTGTCT 100680486 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 |||||| | ||||| | ||||| | |||||| |||||| || || || || ||| Sbjct 100680487 CTTGGTCTTGAAACCGCCGGAGGAGTCATGACTGTTCTTATTCCAAGGAACACCACCATT 100680546 Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440 || || ||| | || || || || || || ||||| || ||| ||| || Sbjct 100680547 CCGACCAAGAAAGAGCAGGTCTTCTCCACCTACTCGGATAACCAGCCTGGTGTGTTGATC 100680606 Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500 || ||| || || || || | || | || || || | ||||| | ||| | Sbjct 100680607 CAGGTTTACGAGGGCGAGAGGACCCGGACCAGGGACAACAACCTCCTTGGGAAATTTGAG 100680666 Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT-TACTTTCGATAT 552559 | || || || ||||||||| | || || || || || || | |||| || || Sbjct 100680667 CTCTCTGGAATCCCCCCTGCTCCTAGGGGTGTCCCTCAGATCACTGTATGCTTT-GACAT 100680725 Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||||| ||||| ||| ||||||| ||||| Sbjct 100680726 CGATGCTAATGGTATTCTGAATGTCTCTGCT 100680756 Score = 102 bits (112), Expect = 7e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| |||||||| || ||||| | || ||||| | || ||||||||| Sbjct 150134965 GCAGTGATCACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGTCCACAAAAGATGCT 150134906 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||||| |||||||| ||| | ||| | || |||||||||||||| || ||||| || Sbjct 150134905 GGACGAATTGCTGGCCTTGAGGTTGAAAGAATAATCAATGAACCTACAGCAGCTGCTCTG 150134846 Query 550520 GCATATGGA 550528 | |||||| Sbjct 150134845 TCCTATGGA 150134837 >seq1 Length=275477322 Score = 116 bits (128), Expect = 3e-20 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| |||||||| || || || |||||| | ||| | Sbjct 266205494 AAATTACAAAAGCAGTGGTTACTGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAA 266205435 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| || || | |||||||||||||| |||||||| |||| Sbjct 266205434 CAAAAGATGCTGGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTG 266205375 Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545 |||| || | || ||||| ||| | ||| ||||||| Sbjct 266205374 CTGCATCATTGGCCTATGGTTTTGAGAAGAAAAATAATGA 266205335 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || |||||||| || | || || || || |||| Sbjct 571140 ATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 571081 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| || |||||| | ||||| ||||| || || ||||||||||| Sbjct 571080 CTGGGGTGATTGCTGGTCTCAATGTTTTGCGTATCATCAACGAGCCAACTGCTGCTGCTA 571021 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| |||||||| Sbjct 571020 TTGCTTATGGTCTTGATAA 571002 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || ||||| |||||||||||| | ||| || ||||||||| Sbjct 180517712 GCTGTGATCACAGTTCCTGCTTATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 180517653 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||| | || | ||||| |||||||| ||||| || || || || | || Sbjct 180517652 GGCAGAATTGCCGCGCTGGAGGTTCTGCGTATTATAAATGAGCCAACAGCGGCATCGCTA 180517593 Query 550520 GCATATGGACTTGATAA 550536 |||||||| |||| || Sbjct 180517592 GCATATGGTTTTGAGAA 180517576 >seq4 Length=191835039 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || || |||||||| | || || || || |||| Sbjct 12916224 ATGCTGTTGTCACAGTTCCTGCCTACTTCAACGACTCACAGAGGCAGGCCACCAAGGATG 12916283 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||||||| || ||||| ||||| |||||||| |||||||||||||| Sbjct 12916284 CTGGAGTGATCGCTGGACTCAACGTTCTGCGTATCATCAATGAGCCTACTGCTGCTGCTA 12916343 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 12916344 TTGCCTATGGTCTTGACAA 12916362 Score = 100 bits (110), Expect = 2e-15 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||| || ||||| ||| |||| ||| |||||||| || || || Sbjct 68254223 GAGACGGAGGACAAGGTGCAGGGTGGACTCCTTTTG--AATGTTGTAATCTGCAAGCGTA 68254166 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||| || ||||| ||||| ||||| | ||||| ||||||||||||||| Sbjct 68254165 CGCCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATTCCT 68254106 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 || || || || || ||| || || ||||| ||||||| Sbjct 68254105 TCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATCGTATCAG 68254063 Score = 89.7 bits (98), Expect = 4e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 393992 TCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGT 394051 || ||||||| | || ||| ||||| | |||| | |||| |||||| | |||| Sbjct 61405477 TCGATGTTATATGGAGTGACAGTTTCAGGATATGTCAGGTTCAAAGCAATACTCCATGGT 61405536 Query 394052 AGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATA 394111 | ||| | ||||| || ||||||||||| | || ||||| ||||| |||| | | Sbjct 61405537 ACTCCTAATTCATCAATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCTGAGAAA 61405596 Query 394112 TCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTT 394155 |||||||| |||||||| | ||||| | ||| | |||||||| Sbjct 61405597 TCCACACGCTTTCCCATCAAGTTTCCTCTAATGCGGCCTTCTTT 61405640 >seq2 Length=243061704 Score = 102 bits (112), Expect = 7e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| |||||||||||| | || ||||| || || || |||||| Sbjct 39807110 GCGGTGATTACTGTTCCAGCCTATTTTAATGACGCTCAGCGTCAGGCCACAAAGGATGCT 39807169 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| ||||| | || ||||||||||| || || ||||| || Sbjct 39807170 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 39807229 Query 550520 GCATATGGA 550528 | |||||| Sbjct 39807230 TCTTATGGA 39807238 >seq13230 Length=516924 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| |||||||||||| | || || || ||||| || |||||| Sbjct 248379 GCTGTTATTACCGTCCCAGCTTATTTTAATGACGCTCAGCGCCAGGCTACCAAGGATGCT 248320 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | || | | ||||||||||| || |||||||| || || Sbjct 248319 GGTAGGATTGCTGGACTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTG 248260 Query 550520 GCATATGGA 550528 |||||||| Sbjct 248259 TCATATGGA 248251 >seq5 Length=158699395 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||| ||| | || || || |||||| | | | |||| | ||||||| | || | Sbjct 133737996 CACCTGAAGAGATCTCCTCCATGGTTCTCACCAGGATGAGAGAAACAGCTGAGGTTTATC 133737937 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| || | | ||||| || || ||||| |||| || || || ||||| || | Sbjct 133737936 TTGGCAAAACCATCAAAGATGCTGTCATCACTGTCCCAGTCTACTTCAACGACTCCCAGC 133737877 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | |||||||| | || || || |||||||| || ||||| | || || ||||||| Sbjct 133737876 GACAAGCTACCATCGACGCCGGCACCATTGCTGGCCTGAATGTCATGCGCATCATCAATG 133737817 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| ||||| || || || || ||||| ||||| || Sbjct 133737816 AACCAACTGCCGCAGCCCTCGCCTATGGTCTTGAGAA 133737780 >seq6 Length=240577051 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || ||||| || || || ||||| || | || ||||| || || | Sbjct 34382446 ATGCTGTGGTGACAGTGCCAGCCTACTTCAACGACTCGCAGAGGCAGGCTACCAAGGACG 34382387 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| || ||||| | ||||| ||||| || || ||||||||||| Sbjct 34382386 CTGGTGTCATTGCTGGCCTCAATGTCATGCGTATCATCAACGAGCCCACTGCTGCTGCGA 34382327 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 34382326 TTGCCTATGGTCTTGACAA 34382308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028217737725610