Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq7 116 3e-20
seq1 116 3e-20
seq4 107 2e-17
seq2 102 7e-16
seq13230 98.7 8e-15
seq5 95.1 1e-13
seq6 89.7 4e-12
>seq7
Length=154015841
Score = 116 bits (128), Expect = 3e-20
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
|| || || || ||||| ||||||| ||||||||| | || || ||| | | ||
Sbjct 100679614 AAGCAGTTCTCTGCAGAAGAAATTTCTTCTATGGTTCTTATCAAGATGCGCGAGATTGCT 100679673
Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
|||| |||| |||| | | | | |||| || | ||||| || || || |||||
Sbjct 100679674 GAAGCTTACCTTGGATCAACCA-TAAAGAATGCTGTGGTTACTGTTCCTGCTTACTTTAA 100679732
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
||| || || | || || ||||| |||||||| |||||| || || ||||| | ||
Sbjct 100679733 TGATTCCCAGAGGCAGGCAACTAAGGATGCTGGTGTTATTGCCGGGCTCAATGTCATGCG 100679792
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||| |||||||| || |||||||||||| |||| ||||| ||||| ||
Sbjct 100679793 TATCATCAATGAGCCAACTGCTGCTGCAATTGCCTATGGTCTTGACAA 100679840
Score = 113 bits (124), Expect = 4e-19
Identities = 336/511 (66%), Gaps = 8/511 (2%)
Strand=Plus/Plus
Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143
|| ||| | ||||| ||||| || || ||||| |||| || |||||||| || ||
Sbjct 100680250 AGGGATGCCAAGATGGATAAGAGCACTGTCCATGATGTTGTCCTCGTTGGTGGTTCGACT 100680309
Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202
|| || || ||| | | | |||| || ||| || |||||| || || | ||
Sbjct 100680310 AGGATCCCCAAAGTCCAGCAGCTGTTGCAGGACTTCTT-CAATGGAAAGGAACTT--TGC 100680366
Query 552203 AAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260
||| | | ||||| ||||| ||||||||||||||||| || |||| || ||||| |||
Sbjct 100680367 AAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTTCAGGCTGCTATCCTT 100680426
Query 552261 TCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320
||| | |||| || | || | || | || | ||||| || || || |||
Sbjct 100680427 AGTGGCGAGGGCAATGAGAAGGTTCAGGACCTTCTCCTCCTCGATGTGACCCCACTGTCT 100680486
Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380
|||||| | ||||| | ||||| | |||||| |||||| || || || || |||
Sbjct 100680487 CTTGGTCTTGAAACCGCCGGAGGAGTCATGACTGTTCTTATTCCAAGGAACACCACCATT 100680546
Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440
|| || ||| | || || || || || || ||||| || ||| ||| ||
Sbjct 100680547 CCGACCAAGAAAGAGCAGGTCTTCTCCACCTACTCGGATAACCAGCCTGGTGTGTTGATC 100680606
Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500
|| ||| || || || || | || | || || || | ||||| | ||| |
Sbjct 100680607 CAGGTTTACGAGGGCGAGAGGACCCGGACCAGGGACAACAACCTCCTTGGGAAATTTGAG 100680666
Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT-TACTTTCGATAT 552559
| || || || ||||||||| | || || || || || || | |||| || ||
Sbjct 100680667 CTCTCTGGAATCCCCCCTGCTCCTAGGGGTGTCCCTCAGATCACTGTATGCTTT-GACAT 100680725
Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCT 552590
|||||| ||||| ||| ||||||| |||||
Sbjct 100680726 CGATGCTAATGGTATTCTGAATGTCTCTGCT 100680756
Score = 102 bits (112), Expect = 7e-16
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
||||| || ||||| |||||||| || ||||| | || ||||| | || |||||||||
Sbjct 150134965 GCAGTGATCACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGTCCACAAAAGATGCT 150134906
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
||||| |||||||| ||| | ||| | || |||||||||||||| || ||||| ||
Sbjct 150134905 GGACGAATTGCTGGCCTTGAGGTTGAAAGAATAATCAATGAACCTACAGCAGCTGCTCTG 150134846
Query 550520 GCATATGGA 550528
| ||||||
Sbjct 150134845 TCCTATGGA 150134837
>seq1
Length=275477322
Score = 116 bits (128), Expect = 3e-20
Identities = 122/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
|| |||| | ||||| | ||||| |||||||| || || || |||||| | ||| |
Sbjct 266205494 AAATTACAAAAGCAGTGGTTACTGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAA 266205435
Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508
| ||||||||||| |||||||| || || | |||||||||||||| |||||||| ||||
Sbjct 266205434 CAAAAGATGCTGGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTG 266205375
Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545
|||| || | || ||||| ||| | ||| |||||||
Sbjct 266205374 CTGCATCATTGGCCTATGGTTTTGAGAAGAAAAATAATGA 266205335
Score = 102 bits (112), Expect = 7e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| || || || || |||||||| || | || || || || ||||
Sbjct 571140 ATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 571081
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| |||||||| || |||||| | ||||| ||||| || || |||||||||||
Sbjct 571080 CTGGGGTGATTGCTGGTCTCAATGTTTTGCGTATCATCAACGAGCCAACTGCTGCTGCTA 571021
Query 550518 TTGCATATGGACTTGATAA 550536
|||| ||||| ||||||||
Sbjct 571020 TTGCTTATGGTCTTGATAA 571002
Score = 86.0 bits (94), Expect = 5e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || || || ||||| |||||||||||| | ||| || |||||||||
Sbjct 180517712 GCTGTGATCACAGTTCCTGCTTATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 180517653
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| | ||||| | || | ||||| |||||||| ||||| || || || || | ||
Sbjct 180517652 GGCAGAATTGCCGCGCTGGAGGTTCTGCGTATTATAAATGAGCCAACAGCGGCATCGCTA 180517593
Query 550520 GCATATGGACTTGATAA 550536
|||||||| |||| ||
Sbjct 180517592 GCATATGGTTTTGAGAA 180517576
>seq4
Length=191835039
Score = 107 bits (118), Expect = 2e-17
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || || || || || || |||||||| | || || || || ||||
Sbjct 12916224 ATGCTGTTGTCACAGTTCCTGCCTACTTCAACGACTCACAGAGGCAGGCCACCAAGGATG 12916283
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| || |||||||| || ||||| ||||| |||||||| ||||||||||||||
Sbjct 12916284 CTGGAGTGATCGCTGGACTCAACGTTCTGCGTATCATCAATGAGCCTACTGCTGCTGCTA 12916343
Query 550518 TTGCATATGGACTTGATAA 550536
|||| ||||| ||||| ||
Sbjct 12916344 TTGCCTATGGTCTTGACAA 12916362
Score = 100 bits (110), Expect = 2e-15
Identities = 121/163 (74%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| ||||| || ||||| ||| |||| ||| |||||||| || || ||
Sbjct 68254223 GAGACGGAGGACAAGGTGCAGGGTGGACTCCTTTTG--AATGTTGTAATCTGCAAGCGTA 68254166
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||| ||||| || ||||| ||||| ||||| | ||||| |||||||||||||||
Sbjct 68254165 CGCCCATCCTCAAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATTCCT 68254106
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416
|| || || || || ||| || || ||||| |||||||
Sbjct 68254105 TCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATCGTATCAG 68254063
Score = 89.7 bits (98), Expect = 4e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 393992 TCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGT 394051
|| ||||||| | || ||| ||||| | |||| | |||| |||||| | ||||
Sbjct 61405477 TCGATGTTATATGGAGTGACAGTTTCAGGATATGTCAGGTTCAAAGCAATACTCCATGGT 61405536
Query 394052 AGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATA 394111
| ||| | ||||| || ||||||||||| | || ||||| ||||| |||| | |
Sbjct 61405537 ACTCCTAATTCATCAATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCTGAGAAA 61405596
Query 394112 TCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTT 394155
|||||||| |||||||| | ||||| | ||| | ||||||||
Sbjct 61405597 TCCACACGCTTTCCCATCAAGTTTCCTCTAATGCGGCCTTCTTT 61405640
>seq2
Length=243061704
Score = 102 bits (112), Expect = 7e-16
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| ||||| |||||||||||| | || ||||| || || || ||||||
Sbjct 39807110 GCGGTGATTACTGTTCCAGCCTATTTTAATGACGCTCAGCGTCAGGCCACAAAGGATGCT 39807169
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| || |||||||| ||| ||||| | || ||||||||||| || || ||||| ||
Sbjct 39807170 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 39807229
Query 550520 GCATATGGA 550528
| ||||||
Sbjct 39807230 TCTTATGGA 39807238
>seq13230
Length=516924
Score = 98.7 bits (108), Expect = 8e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || ||||| |||||||||||| | || || || ||||| || ||||||
Sbjct 248379 GCTGTTATTACCGTCCCAGCTTATTTTAATGACGCTCAGCGCCAGGCTACCAAGGATGCT 248320
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| | ||||||||||| | || | | ||||||||||| || |||||||| || ||
Sbjct 248319 GGTAGGATTGCTGGACTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTG 248260
Query 550520 GCATATGGA 550528
||||||||
Sbjct 248259 TCATATGGA 248251
>seq5
Length=158699395
Score = 95.1 bits (104), Expect = 1e-13
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379
|||| ||| | || || || |||||| | | | |||| | ||||||| | || |
Sbjct 133737996 CACCTGAAGAGATCTCCTCCATGGTTCTCACCAGGATGAGAGAAACAGCTGAGGTTTATC 133737937
Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439
|||| || | | ||||| || || ||||| |||| || || || ||||| || |
Sbjct 133737936 TTGGCAAAACCATCAAAGATGCTGTCATCACTGTCCCAGTCTACTTCAACGACTCCCAGC 133737877
Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499
| |||||||| | || || || |||||||| || ||||| | || || |||||||
Sbjct 133737876 GACAAGCTACCATCGACGCCGGCACCATTGCTGGCCTGAATGTCATGCGCATCATCAATG 133737817
Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|||| ||||| || || || || ||||| ||||| ||
Sbjct 133737816 AACCAACTGCCGCAGCCCTCGCCTATGGTCTTGAGAA 133737780
>seq6
Length=240577051
Score = 89.7 bits (98), Expect = 4e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || ||||| || || || ||||| || | || ||||| || || |
Sbjct 34382446 ATGCTGTGGTGACAGTGCCAGCCTACTTCAACGACTCGCAGAGGCAGGCTACCAAGGACG 34382387
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| |||||||| || ||||| | ||||| ||||| || || |||||||||||
Sbjct 34382386 CTGGTGTCATTGCTGGCCTCAATGTCATGCGTATCATCAACGAGCCCACTGCTGCTGCGA 34382327
Query 550518 TTGCATATGGACTTGATAA 550536
|||| ||||| ||||| ||
Sbjct 34382326 TTGCCTATGGTCTTGACAA 34382308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028217737725610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |