Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq3 122 7e-23 seq5 120 2e-22 seq7 102 6e-17 >seq2 Length=243061704 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || ||||||||||| || | || | | |||| |||| ||| Sbjct 233057454 TGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGGCCATCCTCCAGCTGC 233057395 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| |||| |||||| |||||||| |||||||| || || || || || || Sbjct 233057394 TTACCGGCAAAGATCAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTG 233057335 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| | || || || ||||||| || ||||| || Sbjct 233057334 GCCTTGACATTGTCGATTGTGTCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTC 233057275 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 233057274 AAGGTCTTCACAAAGATCTGCAT 233057252 >seq3 Length=300915289 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | || | ||| || ||||| ||||| || || || |||||||| || | Sbjct 25197653 TTCCTCCTCGAAGGCGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCTG 25197594 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | |||| || | ||||| || ||||| || | | ||| ||||| || | Sbjct 25197593 CCAGAGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATGAGCCTCTGCTGATCAGGTG 25197534 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || ||||| ||||| || || ||| | || | ||||| || | |||| Sbjct 25197533 GGATTCCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCTGAACTCTCCA 25197474 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | |||||||| | ||| || ||||| | || || ||||||||||||||| Sbjct 25197473 CCTCAAGAGTTATCGTCTTCCCGGTGAGGGTCTTCACAAATATCTGCATG 25197424 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || ||||| | || | |||||| || ||||| || || || || || || || Sbjct 25198107 CCTCCCCTCAAACGCAGCACAAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGCC 25198048 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || ||||| || | ||||| || || || || Sbjct 25198047 AATGTGCGCCCATCCTCCAATTGCTTCCCAGCAAAGATAAGTCGCTGCTGGTCTGGTGGG 25197988 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| || || || || ||| | || | ||||| || | || ||| Sbjct 25197987 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATTGTGTCGGAGCTCTCAACT 25197928 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || |||| || || ||||| |||||||| Sbjct 25197927 TCAAGTGTGATGGTCTTCCCAGTTAGGGTCTTGACAAAAATCTGCAT 25197881 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| ||||| || ||||||||||| || | || | | || ||| Sbjct 25197861 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAATGTGCGTCCGTCCTCC 25197802 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || ||||| || | ||||| || || ||||| ||||| ||||| || || Sbjct 25197801 GGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGG 25197742 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | |||||||| | || ||||| ||||||| || || Sbjct 25197741 ATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAGAGTGATAGTCTTC 25197682 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || || ||||| || ||||| Sbjct 25197681 CTAGTAAGTGTCTTCACAAAGATATGCAT 25197653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | |||||||| || || || || || || || || || Sbjct 25197423 CCACCTCTCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCC 25197364 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| || | | ||| ||||| || || Sbjct 25197363 AGTGTCCGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCCGGAGGG 25197304 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| ||||| || || ||| | || | |||||| || | || || Sbjct 25197303 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATAGTGTCGGAGCTCTCAACC 25197244 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| || || || || | ||| || ||||||||||||||| Sbjct 25197243 TCCAAAGTGATGGTCTTCCCTGTGAGAGTCTTGACAAATATCTGCATG 25197196 >seq5 Length=158699395 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| ||||| || || |||||||| || | || | | |||| || | ||| Sbjct 71676957 TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCTAAGGTGCGGCCATCCTCGAGCTGC 71677016 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| ||||| || |||||||| || || |||||||| || Sbjct 71677017 TTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTC 71677076 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| || || || || Sbjct 71677077 GCCTTCACATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGTC 71677136 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 71677137 AAGGTCTTCACAAAGATCTGCATG 71677160 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| ||||| || || ||||| || || | || | | |||| || | ||| Sbjct 71681790 TGAAGGGTAGACTCTTTCTGAATGTTGTAGTCAGCTAAGGTGCGGCCATCCTCGAGCTGC 71681849 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| ||||| || |||||||| || || |||||||| || Sbjct 71681850 TTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTC 71681909 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| || || || || Sbjct 71681910 GCCTTCACATTGTCGATTGTGTCTGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGTC 71681969 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 71681970 AAGGTCTTCACAAAAATCTGCATG 71681993 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || || || || || | ||| | | |||| ||| Sbjct 71681556 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCGGCCATCCTCC 71681615 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | ||||| || || || || ||||||||||| |||||| Sbjct 71681616 AGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCTTTGTCTTGA 71681675 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| ||| ||| | || | |||||||| | || |||||||| |||| || || Sbjct 71681676 ATCTTTGCTTTCACATTATCAATTGTGTCAGAAGACTCAACTTCAAGTGTGATGGTCTTT 71681735 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || || || || |||||| Sbjct 71681736 CCAGTCAGAGTCTTCACGAAGATTTGCATG 71681765 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || ||||| |||||||| ||||| | || | |||| || | ||| Sbjct 74943762 TGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGC 74943703 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || || ||||| || || || || || || Sbjct 74943702 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 74943643 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||||| | || || ||||| |||| || |||||||| Sbjct 74943642 GCCTTCACGTTATCGATGGTGTCAGAGGACTCGACCTCAAGTGTGATGGTCTTGCCGGTG 74943583 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 74943582 AGGGTCTTCACAAAGATCTGCAT 74943560 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || ||||| |||||||| ||||| | || | |||| || | ||| Sbjct 74943990 TGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGC 74943931 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || || ||||| || || || || || || Sbjct 74943930 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 74943871 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||||| | || || ||||| |||| || |||||||| Sbjct 74943870 GCCTTCACGTTATCGATGGTGTCAGAGGACTCAACCTCAAGTGTGATGGTCTTGCCGGTG 74943811 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 74943810 AGGGTCTTCACAAAGATCTGCAT 74943788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| || || || || || ||||| || || | ||||| |||| ||| Sbjct 64494143 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCTAACGTTCTCCCATCTTCC 64494202 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 64494203 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 64494262 >seq7 Length=154015841 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || |||||||| || |||| || | | |||| || | ||| Sbjct 60356652 TGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTGCGGCCATCCTCAAGCTGC 60356711 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| || || ||||||||||| || || || || || || Sbjct 60356712 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 60356771 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || ||||| |||| || ||||| || Sbjct 60356772 GCCTTCACATTGTCAATGGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTG 60356831 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 60356832 AGGGTCTTGACGAAGATCTGCATG 60356855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396179928408873