Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 295 1e-74 seq3 221 2e-52 >seq2 Length=243061704 Score = 295 bits (326), Expect = 1e-74 Identities = 588/862 (68%), Gaps = 23/862 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 119860613 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 119860672 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA---G 47955 ||| || ||||||||||| | ||| |||| | ||| ||| || ||| | Sbjct 119860673 CATCCAGTCGAAGGGGTTGGCGGCGTTGTACATCT-TGTTGCACCCTAGTG--CCATGAG 119860729 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 |||| | || |||||| |||||||||| | |||||| | | ||||||||| | ||| Sbjct 119860730 CAGGCGGTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAG 119860789 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||||| | || | || ||||| ||| || | |||||| || | || || Sbjct 119860790 CGCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGAT 119860849 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || ||||||||||| | | ||| |||| ||| ||| | ||||| | ||| || Sbjct 119860850 CTCGCGGACGCGGGACTCGTCGAGCTTGCTGCGGAGGAGCTCG---TAGAGGAGGCACGC 119860906 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || || Sbjct 119860907 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 119860966 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| ||| | || ||||||||||| || || ||| ||||| |||||||||||||| Sbjct 119860967 CATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 119861026 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCC 48314 ||| || ||||||||| ||| || ||| | |||||| | | | | ||||| Sbjct 119861027 CTCGACGCAGGCGAACGCGACGAG--TCGCTCGG--CGAAGCGCTCCCCGCCGTCGATCC 119861082 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA-- 48372 | | |||||||| ||||| || | || | || || ||||| ||||| Sbjct 119861083 ACCGCATGGCCCAGTCCGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAAA 119861142 Query 48373 -GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | | ||| ||| | |||| | || || ||||||| | |||||||| Sbjct 119861143 GGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAAGTCTCGAGCAGCAGCGAGTACATCT 119861199 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||||| | |||||| |||| Sbjct 119861200 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCT 119861259 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | ||| | | | || ||||| || || || || || || || | Sbjct 119861260 GCACGTCGGACATGAAGCGCGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 119861319 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGC 48608 ||||||| ||||| || | ||| |||||||||| ||| ||| | | | |||| Sbjct 119861320 AGAAGGCCAGGACGTGGGAGATGAAGTGGCGCTCGTCAGGGGAGAGGGACTCGTCCCAGT 119861379 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | |||| | ||||||||| ||||| | |||||||||||||| | || || | Sbjct 119861380 GGCGGGCGTCGGCGGACAGGTCCACCTCTTCGGCCGTCCAGAAGGACGCCACCGCCTTCT 119861439 Query 48669 TGTACATGCCCCATATGTCCGG 48690 |||| | |||| || | ||| Sbjct 119861440 TGTAGAACTCCCAGATCTGCGG 119861461 >seq3 Length=300915289 Score = 221 bits (244), Expect = 2e-52 Identities = 574/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 250095620 CTGGTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 250095679 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | ||| | |||| | ||| Sbjct 250095680 CATCCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGT--GCCCCAGCGCCATGAGC 250095737 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | ||| Sbjct 250095738 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGC 250095797 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || ||||| ||| || | ||||| || | || ||| Sbjct 250095798 GCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGATC 250095857 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || ||| ||| | | ||| |||| ||| | | | ||||| | |||||| Sbjct 250095858 TCGCGGACACGGTCCTCGTCGAGCTTGCTGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 250095914 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | || | ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 250095915 AAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGC 250095974 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 250095975 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 250096034 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| | | | | |||||| Sbjct 250096035 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCA 250096090 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | |||||||| ||||| | ||| ||| || || || | ||| |||| Sbjct 250096091 GCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGACGGCGCGGA 250096146 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | | || | || || ||||||| | ||||| Sbjct 250096147 AGAGGCGGTCCTT---CTCGGCGCCATCGCGGATGTACGTCTCGAGCAGCAGCGAGTACA 250096203 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | Sbjct 250096204 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGA 250096263 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | || ||||| || || || || || || | Sbjct 250096264 CCTGGACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGG 250096323 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| || || ||| || | || Sbjct 250096324 CGAAGAAGGCGAGCACGTGAGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGCCGCGTCCC 250096383 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | ||||| || || || | |||||||||||||| | || | Sbjct 250096384 AGTGGCGCGCGTCGGCGGAGAGGTCAACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCT 250096443 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | ||||| | |||| || | ||| || Sbjct 250096444 TCTTGTAGAACTCCCAGATCTGCGGGTA 250096471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931295387221760