Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2 295 1e-74
seq3 221 2e-52
>seq2
Length=243061704
Score = 295 bits (326), Expect = 1e-74
Identities = 588/862 (68%), Gaps = 23/862 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || || | ||||| |||||||| ||||| |||| || ||||||| |||
Sbjct 119860613 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 119860672
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA---G 47955
||| || ||||||||||| | ||| |||| | ||| ||| || ||| |
Sbjct 119860673 CATCCAGTCGAAGGGGTTGGCGGCGTTGTACATCT-TGTTGCACCCTAGTG--CCATGAG 119860729
Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
|||| | || |||||| |||||||||| | |||||| | | ||||||||| | |||
Sbjct 119860730 CAGGCGGTCGGCGACGAACTCGATGTACTCGCTCATGAGCGCGCCGTTCATGCCGACGAG 119860789
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
| ||||| | || | || ||||| ||| || | |||||| || | || ||
Sbjct 119860790 CGCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCCACGGCGTCGGCGACGAT 119860849
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
|| ||||||||||| | | ||| |||| ||| ||| | ||||| | ||| ||
Sbjct 119860850 CTCGCGGACGCGGGACTCGTCGAGCTTGCTGCGGAGGAGCTCG---TAGAGGAGGCACGC 119860906
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||
Sbjct 119860907 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 119860966
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||||| ||| | || ||||||||||| || || ||| ||||| ||||||||||||||
Sbjct 119860967 CATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 119861026
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCC 48314
||| || ||||||||| ||| || ||| | |||||| | | | | |||||
Sbjct 119861027 CTCGACGCAGGCGAACGCGACGAG--TCGCTCGG--CGAAGCGCTCCCCGCCGTCGATCC 119861082
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA-- 48372
| | |||||||| ||||| || | || | || || ||||| |||||
Sbjct 119861083 ACCGCATGGCCCAGTCCGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAAA 119861142
Query 48373 -GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431
| | | ||| ||| | |||| | || || ||||||| | ||||||||
Sbjct 119861143 GGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAAGTCTCGAGCAGCAGCGAGTACATCT 119861199
Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491
| ||||| | ||||| || ||||||||||| ||||||||||| | |||||| ||||
Sbjct 119861200 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCT 119861259
Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551
|||| || | ||| | | | || ||||| || || || || || || || |
Sbjct 119861260 GCACGTCGGACATGAAGCGCGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 119861319
Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGC 48608
||||||| ||||| || | ||| |||||||||| ||| ||| | | | ||||
Sbjct 119861320 AGAAGGCCAGGACGTGGGAGATGAAGTGGCGCTCGTCAGGGGAGAGGGACTCGTCCCAGT 119861379
Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668
| |||| | ||||||||| ||||| | |||||||||||||| | || || |
Sbjct 119861380 GGCGGGCGTCGGCGGACAGGTCCACCTCTTCGGCCGTCCAGAAGGACGCCACCGCCTTCT 119861439
Query 48669 TGTACATGCCCCATATGTCCGG 48690
|||| | |||| || | |||
Sbjct 119861440 TGTAGAACTCCCAGATCTGCGG 119861461
>seq3
Length=300915289
Score = 221 bits (244), Expect = 2e-52
Identities = 574/868 (66%), Gaps = 29/868 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| ||||| || | ||||| |||||||| ||||| |||| || ||||||| |||
Sbjct 250095620 CTGGTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 250095679
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956
||| || ||| ||||||| ||| |||| | | ||| | |||| | |||
Sbjct 250095680 CATCCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGT--GCCCCAGCGCCATGAGC 250095737
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
||| | || |||||| |||||||||| | |||||| | ||||||||| | |||
Sbjct 250095738 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGC 250095797
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
| ||||| | || | || ||||| ||| || | ||||| || | || |||
Sbjct 250095798 GCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACGGCGTCGGCGACGATC 250095857
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| || ||| ||| | | ||| |||| ||| | | | ||||| | ||||||
Sbjct 250095858 TCGCGGACACGGTCCTCGTCGAGCTTGCTGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 250095914
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | || | ||| ||||| ||| ||||||| ||||||||||| ||| || |||
Sbjct 250095915 AAGTCGCAATGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGC 250095974
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| || | || ||||||||||| || || ||| ||||| |||||||||||||||
Sbjct 250095975 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 250096034
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315
|| || ||||| ||| ||| | ||| | |||||| | | | | ||||||
Sbjct 250096035 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCA 250096090
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371
| | |||||||| ||||| | ||| ||| || || || | ||| ||||
Sbjct 250096091 GCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGACGGCGCGGA 250096146
Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428
||| | | ||| ||| | | || | || || ||||||| | |||||
Sbjct 250096147 AGAGGCGGTCCTT---CTCGGCGCCATCGCGGATGTACGTCTCGAGCAGCAGCGAGTACA 250096203
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| |
Sbjct 250096204 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGA 250096263
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
|||| || || | ||| | || ||||| || || || || || || |
Sbjct 250096264 CCTGGACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGG 250096323
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605
| |||||||| || || || | ||| |||||||||| || || ||| || | ||
Sbjct 250096324 CGAAGAAGGCGAGCACGTGAGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGCCGCGTCCC 250096383
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665
|| | |||| | ||||| || || || | |||||||||||||| | || |
Sbjct 250096384 AGTGGCGCGCGTCGGCGGAGAGGTCAACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCT 250096443
Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693
| ||||| | |||| || | ||| ||
Sbjct 250096444 TCTTGTAGAACTCCCAGATCTGCGGGTA 250096471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931295387221760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |