Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3 199 7e-46
seq2 196 9e-45
>seq3
Length=300915289
Score = 199 bits (220), Expect = 7e-46
Identities = 565/859 (66%), Gaps = 31/859 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||| | ||||||||||| || |||||| ||||| ||| |||| ||
Sbjct 250096462 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTC 250096403
Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| ||| | | |||| |||| || ||||| ||||||| || || ||
Sbjct 250096402 TCCGCCGACGCGCGCCACTGGGACGCGGCGCTCTCCAACGACGAGCGCCACTTCATCTCT 250096343
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
||||| | || ||||| || ||||| || || || ||| |||||| || | |
Sbjct 250096342 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGC 250096283
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| || || ||| || ||||| |||||||| |||||||| ||||||
Sbjct 250096282 TTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATC 250096223
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
|| || | ||||| ||| |||| | ||| || ||||||||| || | ||||
Sbjct 250096222 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGATGGCGCC 250096163
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
|||| || || || || | ||| |||| ||| ||| | | | |||||
Sbjct 250096162 GAGAAGGACCGCCTCTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 250096103
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
||||||||| |||||| || || | |||||| || |||||| || || |||||
Sbjct 250096102 TGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCCTCGTCGCCTT 250096047
Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
|| ||| || ||||||||||| ||| || || || |||| |||||||||||||||||
Sbjct 250096046 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 250095989
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| || |||||| ||||| ||| ||||||||||||||| | | ||||||||
Sbjct 250095988 AAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 250095929
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTC 26068
||||| | || || |||||||| ||||| | || | |||| || || || |
Sbjct 250095928 CTCCATTGCGACTTCGCCTGCCTCCTCTA------CGACCTCCTCCGCAGCAAGCTCGAC 250095875
Query 26069 AAGAGACCGTCTAC---AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125
|| |||||| | | || ||| || || || || || |||||| |||||
Sbjct 250095874 GAG-GACCGTGTCCGCGAG-ATCGTCGCCGACGCCGTTGACATCGAGCGCGAGTTCGTCT 250095817
Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185
| ||||||||| | | ||||||||||| ||||| |
Sbjct 250095816 GCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGGGCTCATGAGCCAGTACATCG 250095757
Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACA--GTACGC 26242
||| || ||||||| ||||| || | |||||| | | | | |||| || |||
Sbjct 250095756 AGTTCGTCGCCGACCGCCTGCTCATGGC-GCTGGGGCACAAGAAGATGTACAACGT-CGC 250095699
Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302
| ||||| ||||||| ||||| ||| ||| || | || |||||||||||||| || |
Sbjct 250095698 C-AACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 250095640
Query 26303 AGAGGGTCGGCGACTATCA 26321
|| | ||||| || || ||
Sbjct 250095639 AGCGCGTCGGGGAGTACCA 250095621
>seq2
Length=243061704
Score = 196 bits (216), Expect = 9e-45
Identities = 564/858 (66%), Gaps = 29/858 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||| | ||||||||||| || |||||| ||||||||| | || |||
Sbjct 119861455 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAAGAGGTGGACCTG 119861396
Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| ||| | |||| ||| | || ||| ||||||| || || ||
Sbjct 119861395 TCCGCCGACGCCCGCCACTGGGACGAGTCCCTCTCCCCTGACGAGCGCCACTTCATCTCC 119861336
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAG 25652
|||| |||| ||||| || ||||| || || || ||| |||||| || ||| | |
Sbjct 119861335 CACGTCCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTC-GCGTCGCG 119861277
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| || |||||| || |||||| |||||||| |||||||| |||||
Sbjct 119861276 CTTCATGTCCGACGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCAT 119861217
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772
||| || | ||||| ||| |||| | ||| || ||| ||||| |||| |||
Sbjct 119861216 CGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACTTACATCCGCGACGGCGC 119861157
Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832
||||| || || || || | |||||||| | | ||| | || | ||||||
Sbjct 119861156 CGAGAAGGACCGCCTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCGGA 119861097
Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
||||||||| ||||||| || || | |||||| || |||||| || || || |
Sbjct 119861096 CTGGGCCATGCGGTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGACTCGTCGCGT 119861041
Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949
| || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||
Sbjct 119861040 TCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 119860983
Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009
| || ||| |||||| || || ||| ||||||||||||||| | | ||||||||
Sbjct 119860982 GAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 119860923
Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCT 26067
|| ||| | || || || ||||| |||| ||| || | |||| || || ||
Sbjct 119860922 CCTGCACTGCGACTTCGCGTGCCTCCTCT--ACGAGC----TCCTCCGCAGCAAGCTCGA 119860869
Query 26068 CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126
| || | |||| | ||| || || || ||||| |||||| |||||
Sbjct 119860868 CGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTGGACATCGAGCGCGAGTTCGTCTG 119860809
Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186
| ||||||||| | ||||||||| | ||||| ||
Sbjct 119860808 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCGCTCATGAGCGAGTACATCGA 119860749
Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--C 26243
|| || ||||||| ||||| || || || || | || | |||| |||| |
Sbjct 119860748 GTTCGTCGCCGACCGCCTGCTCATGGCA-CTAGGGTGCAACAAGATGTACA--ACGCCGC 119860692
Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303
||||| ||||||| ||||| ||| ||| || | || |||||||||||||| || ||
Sbjct 119860691 CAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAA 119860632
Query 26304 GAGGGTCGGCGACTATCA 26321
| | ||||| ||||| ||
Sbjct 119860631 GCGTGTCGGTGACTACCA 119860614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928608072292160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |