Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 199 7e-46 seq2 196 9e-45 >seq3 Length=300915289 Score = 199 bits (220), Expect = 7e-46 Identities = 565/859 (66%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| |||| || Sbjct 250096462 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTC 250096403 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| |||| || ||||| ||||||| || || || Sbjct 250096402 TCCGCCGACGCGCGCCACTGGGACGCGGCGCTCTCCAACGACGAGCGCCACTTCATCTCT 250096343 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | | Sbjct 250096342 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGC 250096283 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || || ||| || ||||| |||||||| |||||||| |||||| Sbjct 250096282 TTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATC 250096223 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||||||||| || | |||| Sbjct 250096222 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGATGGCGCC 250096163 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | ||| |||| ||| ||| | | | ||||| Sbjct 250096162 GAGAAGGACCGCCTCTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 250096103 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||||||| |||||| || || | |||||| || |||||| || || ||||| Sbjct 250096102 TGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCCTCGTCGCCTT 250096047 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 250096046 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 250095989 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| ||||| ||| ||||||||||||||| | | |||||||| Sbjct 250095988 AAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 250095929 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTC 26068 ||||| | || || |||||||| ||||| | || | |||| || || || | Sbjct 250095928 CTCCATTGCGACTTCGCCTGCCTCCTCTA------CGACCTCCTCCGCAGCAAGCTCGAC 250095875 Query 26069 AAGAGACCGTCTAC---AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 || |||||| | | || ||| || || || || || |||||| ||||| Sbjct 250095874 GAG-GACCGTGTCCGCGAG-ATCGTCGCCGACGCCGTTGACATCGAGCGCGAGTTCGTCT 250095817 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| | | ||||||||||| ||||| | Sbjct 250095816 GCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGGGCTCATGAGCCAGTACATCG 250095757 Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACA--GTACGC 26242 ||| || ||||||| ||||| || | |||||| | | | | |||| || ||| Sbjct 250095756 AGTTCGTCGCCGACCGCCTGCTCATGGC-GCTGGGGCACAAGAAGATGTACAACGT-CGC 250095699 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| ||||||| ||||| ||| ||| || | || |||||||||||||| || | Sbjct 250095698 C-AACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 250095640 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | ||||| || || || Sbjct 250095639 AGCGCGTCGGGGAGTACCA 250095621 >seq2 Length=243061704 Score = 196 bits (216), Expect = 9e-45 Identities = 564/858 (66%), Gaps = 29/858 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||||||| | || ||| Sbjct 119861455 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAAGAGGTGGACCTG 119861396 Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | |||| ||| | || ||| ||||||| || || || Sbjct 119861395 TCCGCCGACGCCCGCCACTGGGACGAGTCCCTCTCCCCTGACGAGCGCCACTTCATCTCC 119861336 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAG 25652 |||| |||| ||||| || ||||| || || || ||| |||||| || ||| | | Sbjct 119861335 CACGTCCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTC-GCGTCGCG 119861277 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| || |||||| |||||||| |||||||| ||||| Sbjct 119861276 CTTCATGTCCGACGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCAT 119861217 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 ||| || | ||||| ||| |||| | ||| || ||| ||||| |||| ||| Sbjct 119861216 CGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACTTACATCCGCGACGGCGC 119861157 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || || || || | |||||||| | | ||| | || | |||||| Sbjct 119861156 CGAGAAGGACCGCCTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCGGA 119861097 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| ||||||| || || | |||||| || |||||| || || || | Sbjct 119861096 CTGGGCCATGCGGTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGACTCGTCGCGT 119861041 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| || ||||||||||| ||| || || || |||| |||||||||||||||| Sbjct 119861040 TCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 119860983 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 119860982 GAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 119860923 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCT 26067 || ||| | || || || ||||| |||| ||| || | |||| || || || Sbjct 119860922 CCTGCACTGCGACTTCGCGTGCCTCCTCT--ACGAGC----TCCTCCGCAGCAAGCTCGA 119860869 Query 26068 CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | || | |||| | ||| || || || ||||| |||||| ||||| Sbjct 119860868 CGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTGGACATCGAGCGCGAGTTCGTCTG 119860809 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||| | ||||| || Sbjct 119860808 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCGCTCATGAGCGAGTACATCGA 119860749 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--C 26243 || || ||||||| ||||| || || || || | || | |||| |||| | Sbjct 119860748 GTTCGTCGCCGACCGCCTGCTCATGGCA-CTAGGGTGCAACAAGATGTACA--ACGCCGC 119860692 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||| ||||||| ||||| ||| ||| || | || |||||||||||||| || || Sbjct 119860691 CAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAA 119860632 Query 26304 GAGGGTCGGCGACTATCA 26321 | | ||||| ||||| || Sbjct 119860631 GCGTGTCGGTGACTACCA 119860614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928608072292160