Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 1e-17
seq2 89.7 3e-13
>seq3
Length=300915289
Score = 104 bits (114), Expect = 1e-17
Identities = 157/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
|||||||||| || |||||||||||||| || || | || || ||||||||||| |
Sbjct 561867 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCGGTATCATTGAAAACACGTA 561808
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
||| ||||| | |||| | ||| ||| ||||| | |||| | | || || | |
Sbjct 561807 GCATAGGAACGATTCCATTAGAAGTTCCATTTGTTCCTCGAATGTAGCTCCCAGTAGCAC 561748
Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242
||| | |||| ||| | ||||||||| ||||| ||||| || || || || ||
Sbjct 561747 GAATGTTGTGA-ATTGAGACACCGATTCCTCCAGCACATTTGCTTATCGCGGCGCATTCC 561689
Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
|| | ||||| ||||||| | || |||||| |||||||
Sbjct 561688 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 561648
>seq2
Length=243061704
Score = 89.7 bits (98), Expect = 3e-13
Identities = 154/221 (70%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
||||||||||||| || ||||||||||| || || | ||||| || ||||| || |
Sbjct 87114640 TACCTTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTA 87114699
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
|||| ||||| | |||| | || ||| ||||| | |||| | || || | |
Sbjct 87114700 ACATAGGAACAATTCCATTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCAC 87114759
Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242
||||| |||| | ||| | ||| ||||| ||||| |||| ||| | ||||| ||
Sbjct 87114760 GAATATTGTGAAC-TGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCC 87114818
Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
| ||||| ||||||| | ||||| ||| |||||||
Sbjct 87114819 TTCAGAGTATCATAAATTCCCTCAATGCTGTCATCTTTCAT 87114859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252977121853175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |