Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 104 1e-17 seq2 89.7 3e-13 >seq3 Length=300915289 Score = 104 bits (114), Expect = 1e-17 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | || || ||||||||||| | Sbjct 561867 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCGGTATCATTGAAAACACGTA 561808 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| ||| ||||| | |||| | | || || | | Sbjct 561807 GCATAGGAACGATTCCATTAGAAGTTCCATTTGTTCCTCGAATGTAGCTCCCAGTAGCAC 561748 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 ||| | |||| ||| | ||||||||| ||||| ||||| || || || || || Sbjct 561747 GAATGTTGTGA-ATTGAGACACCGATTCCTCCAGCACATTTGCTTATCGCGGCGCATTCC 561689 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | || |||||| ||||||| Sbjct 561688 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 561648 >seq2 Length=243061704 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| || ||||||||||| || || | ||||| || ||||| || | Sbjct 87114640 TACCTTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTA 87114699 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | |||| | || ||| ||||| | |||| | || || | | Sbjct 87114700 ACATAGGAACAATTCCATTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCAC 87114759 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 ||||| |||| | ||| | ||| ||||| ||||| |||| ||| | ||||| || Sbjct 87114760 GAATATTGTGAAC-TGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCC 87114818 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| ||||||| | ||||| ||| ||||||| Sbjct 87114819 TTCAGAGTATCATAAATTCCCTCAATGCTGTCATCTTTCAT 87114859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252977121853175