Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq3 116 4e-21 seq5 102 1e-16 seq8759 91.5 2e-13 >seq2 Length=243061704 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| ||||||||||| || || || Sbjct 119861063 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 119861004 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 119861003 CTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 119860944 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 119860943 GCTCATCTCCCGCGACGAGGGCCTGCAC 119860916 Score = 109 bits (120), Expect = 7e-19 Identities = 236/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||||| ||||| |||| | || ||||| ||||| ||| | | || || || Sbjct 76324920 AACTCCTCCACAGTGTGTGACTCCTCGGTGGCGACCACATAATCACCGGGCTGATCCTGC 76324861 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || |||||||||||||| || || || |||||| || |||||||| ||||| ||| Sbjct 76324860 TGTAGCATGAGCCACATTGCCTCGACGTAGTCCCCAGCGAATCCCCAGTCCCTGGCGGCG 76324801 Query 177685 TTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CA--CCTTTCACAATTTGTTTGACGCCA 177741 ||||||| ||||| | || || ||| || || | || | |||| | Sbjct 76324800 GTGAGGTTGCCGAG---GAAGACCTTGGTCTGCAGGCCGACCTTGATGCGGCCGACGGCG 76324744 Query 177742 TCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGG 177801 || ||||| ||||| |||| | || || | || || |||||||||||||| Sbjct 76324743 CGCGTGATCTTACGCGTGACGAAGTTCTCCCCGCGGCGTGGGGACTCGTGGTTGAAGAGC 76324684 Query 177802 ATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCG 177861 | ||| ||||||| | | || |||| || ||||| || | | |||||| ||| Sbjct 76324683 ACGCCGTTGCAGGCAAATAGGCCGTAGGCCTCACGGTAGTTGACGGTGTACCAGTGCGCG 76324624 Query 177862 GCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 || | |||| | || | ||| ||| || |||| ||| || || ||||| Sbjct 76324623 GCGACCTTGGCGGCGGCGTAGGGGGAGCGGGGGTGGAACGGCGTTTCCTC 76324574 >seq3 Length=300915289 Score = 116 bits (128), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 250096070 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 250096011 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| || || |||||| || || Sbjct 250096010 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCCAACGA 250095951 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCA 65216 || || ||||| || ||||| ||||| Sbjct 250095950 GCTCATCTCCCGCGACGAGGGCCTCCA 250095924 >seq5 Length=158699395 Score = 102 bits (112), Expect = 1e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| ||||| || ||||| ||||| || | | ||| Sbjct 71163017 TTTGTGGAGATGTTTGTTGGTGTTGGTGCTTCCAGAGTTCGTGATCTTTTCAAGAAGGCC 71162958 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 71162957 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTCGGTAGGCAAAGA 71162898 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | || ||||| | || Sbjct 71162897 GGTACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTCAACCAACTGTTGACT 71162838 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| || || | ||||| ||| | |||||||| |||||||| | | Sbjct 71162837 GAGATGGATGGTTTCGAGGGAAACACTGGAATTATTGTTATTGCTGCCACTAACAGAGCT 71162778 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| || | ||| | || || || ||||| Sbjct 71162777 GACATCTTGGATTCTGCTTTACTTAGGCCTGGACGCTTTGA 71162737 Score = 100 bits (110), Expect = 3e-16 Identities = 214/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || || |||| || ||| || || || || |||||| Sbjct 85378492 GGAGCCAAGATCCCCAAGGGATGTCTCCTCGTCGGCCCGCCCGGGACTGGTAAAACCCTC 85378433 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | ||||| ||| |||| || || | || || ||| || ||| | || | | Sbjct 85378432 TTGGCCCGTGCCGTCGCCGGAGAGGCCGGCGTGCCTTTCTTCTCCTGCGCCGCGTCCGAG 85378373 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||||||||| ||||| || || ||||| || | ||| Sbjct 85378372 TTCGTCGAGCTCTTCGTCGGTGTGGGTGCATCCAGGGTCCGTGACCTCTTCGAGAAGGCC 85378313 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||||||||| |||||||||||||| || |||| ||| || Sbjct 85378312 AAGGCCAAGGCGCCCTGCATTGTCTTCATCGATGAGATTGATGCCGTCGGCAGGCAGCGT 85378253 Query 175516 AGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | ||||| | | | | || |||||||| || || || || || || || | || Sbjct 85378252 GGTGCTGG-GCTCGGTGGTGGTAACGACGAGAGGGAGCAGACCATCAACCAGCTCTTGAC 85378194 Query 175575 CGAGATGGATGGCTTTG 175591 |||||||| ||||||| Sbjct 85378193 TGAGATGGACGGCTTTG 85378177 >seq8759 Length=1216561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 ||||||||| |||| || || |||| | || |||| || ||||||||| | | Sbjct 957990 TACTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA--GCTCGATGGGAAGGTTG 958047 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | |||| |||||| ||||| | ||| |||| | | || || ||| ||||||||||| Sbjct 958048 TTGAAAGGCCACAGCACATGCTAATGAGGGTTTCGGTGGGGATACACAAGGAAGACATTG 958107 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | |||| | | |||| ||| | ||||| || | ||| | || || |||||| Sbjct 958108 AGTCTGCCATCAAGACTTACCATCTCATGTCTCAGCGCTGGTTTACACATGCTTCACCAA 958167 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | || ||||||||||| |||||||| || || Sbjct 958168 CGCTTTTCAATGCTGGCACACCAAGGCCCCA 958198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596417556780320