Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07]
20,389 sequences; 1,794,547,441 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq5 95.1 2e-14
>seq5
Length=158699395
Score = 95.1 bits (104), Expect = 2e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || || || | || | |||||| ||| || ||||| | || || | |
Sbjct 71677173 CGAAGGACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCA 71677232
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || ||||| || || | ||| || || ||||| || ||||| ||
Sbjct 71677233 TCCTCAAGCTGCTTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTG 71677292
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || || | ||| | ||| ||| || || || ||||||||||| || || |||
Sbjct 71677293 TCCTGAATCTTTGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATA 71677352
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || ||||| || |||||
Sbjct 71677353 GTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 71677387
Score = 95.1 bits (104), Expect = 2e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || || || | || | |||||| ||| || ||||| | || || | |
Sbjct 71682006 CGAAGGACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCA 71682065
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || ||||| || || | ||| || || ||||| || ||||| ||
Sbjct 71682066 TCCTCAAGCTGCTTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTG 71682125
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || || | ||| | ||| ||| || || || ||||||||||| || || |||
Sbjct 71682126 TCCTGAATCTTTGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATA 71682185
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || ||||| || |||||
Sbjct 71682186 GTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 71682220
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || |||||||||| | ||| || || || | |||| |||||| ||| ||
Sbjct 71681757 ATTTGCATGCCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTG 71681816
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | ||| || | ||| || | || ||||| ||||| || | | ||| |||
Sbjct 71681817 TAGTCAGCTAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGA 71681876
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || || || || ||||| || || | || | ||| || || || |||
Sbjct 71681877 TCTGGGGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAA 71681936
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || || || || | || || ||||| || |||||
Sbjct 71681937 GACTCAACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 71681992
Score = 87.8 bits (96), Expect = 3e-12
Identities = 161/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || |||||||||| | ||| || || || | |||| |||||| ||| ||
Sbjct 71676924 ATTTGCATGCCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTG 71676983
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || | ||| || | ||| || | || ||||| ||||| || | | ||| |||
Sbjct 71676984 TAATCAGCTAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGA 71677043
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || || || || ||||| || || | || | ||| || || || |||
Sbjct 71677044 TCTGGGGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAA 71677103
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || || || || | || || ||||| || |||||
Sbjct 71677104 GACTCAACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 71677159
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||| || || || | | ||| || || || || || |||||||| ||||| ||
Sbjct 71681619 TGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCTTTGTCTTGAATC 71681678
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | ||| ||| || || |||||||||||||| || || || || || ||
Sbjct 71681679 TTTGCTTTCACATTATCAATTGTGTCAGAAGACTCAACTTCAAGTGTGATGGTCTTTCCA 71681738
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || ||||||||
Sbjct 71681739 GTCAGAGTCTTCACGAAGATTTGCAT 71681764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899425111830480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |