Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 2e-14 >seq5 Length=158699395 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || | |||||| ||| || ||||| | || || | | Sbjct 71677173 CGAAGGACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCA 71677232 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || || | ||| || || ||||| || ||||| || Sbjct 71677233 TCCTCAAGCTGCTTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTG 71677292 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||| || || || ||||||||||| || || ||| Sbjct 71677293 TCCTGAATCTTTGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATA 71677352 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| || ||||| Sbjct 71677353 GTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 71677387 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || | |||||| ||| || ||||| | || || | | Sbjct 71682006 CGAAGGACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCA 71682065 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || || | ||| || || ||||| || ||||| || Sbjct 71682066 TCCTCAAGCTGCTTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATCCCTTCCTTG 71682125 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||| || || || ||||||||||| || || ||| Sbjct 71682126 TCCTGAATCTTTGCTTTGACATTGTCAATCGTGTCAGAGGACTCAACTTCAAGGGTGATA 71682185 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| || ||||| Sbjct 71682186 GTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 71682220 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| | ||| || || || | |||| |||||| ||| || Sbjct 71681757 ATTTGCATGCCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTG 71681816 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||| || | ||| || | || ||||| ||||| || | | ||| ||| Sbjct 71681817 TAGTCAGCTAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGA 71681876 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| || || | || | ||| || || || ||| Sbjct 71681877 TCTGGGGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAA 71681936 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || | || || ||||| || ||||| Sbjct 71681937 GACTCAACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 71681992 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| | ||| || || || | |||| |||||| ||| || Sbjct 71676924 ATTTGCATGCCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTG 71676983 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||| || | ||| || | || ||||| ||||| || | | ||| ||| Sbjct 71676984 TAATCAGCTAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGA 71677043 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| || || | || | ||| || || || ||| Sbjct 71677044 TCTGGGGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAA 71677103 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || | || || ||||| || ||||| Sbjct 71677104 GACTCAACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 71677159 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| || || || | | ||| || || || || || |||||||| ||||| || Sbjct 71681619 TGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCTTCTTTGTCTTGAATC 71681678 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| || || |||||||||||||| || || || || || || Sbjct 71681679 TTTGCTTTCACATTATCAATTGTGTCAGAAGACTCAACTTCAAGTGTGATGGTCTTTCCA 71681738 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || |||||||| Sbjct 71681739 GTCAGAGTCTTCACGAAGATTTGCAT 71681764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899425111830480