Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 8e-14 seq5 91.5 3e-13 >seq3 Length=300915289 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGA 192355 |||||| || || ||||| | || || || || | ||| | ||| | || || || Sbjct 25198348 TTAGTT-AACAAGGCCACCGCGGAGGCGCAAAACAAGATGGAGAGTGGATTCCTTCTGGA 25198290 Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 | || ||||| | ||||| || | || |||| || || ||||||||||| | |||| Sbjct 25198289 TGTTGTAATCTGCCAATGTACGACCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCT 25198230 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT 192475 ||||||| || || || || || || || || || || |||||||||| || | | Sbjct 25198229 GTTGATCTGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGGTGT 25198170 Query 192476 CTGA-CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 | || | ||| || || || || ||||| || ||||| || || || | ||| |||||| Sbjct 25198169 CAGAGCTCTTC-ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGC 25198111 Query 192535 AT 192536 || Sbjct 25198110 AT 25198109 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | ||||| || |||| |||||||| || ||||||||||| | || Sbjct 25198063 GATGTTATAGTCCGCCAATGTGCGCCCATCCTCCAATTGCTTCCCAGCAAAGATAAGTCG 25198004 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || || || ||||| || || || || ||||| || | Sbjct 25198003 CTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATTGT 25197944 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || ||||| || || ||||| || ||||||| || || | ||| ||||| Sbjct 25197943 GTCGGAGCTCTCAACTTCAAGTGTGATGGTCTTCCCAGTTAGGGTCTTGACAAAAATCTG 25197884 Query 192534 CAT 192536 ||| Sbjct 25197883 CAT 25197881 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||| || | || || || | ||||| ||| || |||||| || || Sbjct 25197654 ATTCCTCCTCGAAGGCGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCT 25197595 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || || |||||||| | ||||| ||||||||| Sbjct 25197594 GCCAGAGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATGAGCCTCTGCTGATCAGGT 25197535 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || ||||| || || || || ||||| || | ||||| || Sbjct 25197534 GGGATTCCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCTGAACTCTCC 25197475 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || || | || || | |||||||||||| Sbjct 25197474 ACCTCAAGAGTTATCGTCTTCCCGGTGAGGGTCTTCACAAATATCTGCAT 25197425 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||||| |||||| |||||| ||||||| ||||| ||| | || ||| Sbjct 25197861 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAATGTGCGTCCGTCCTCC 25197802 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| | || ||| || || || || || || ||||| || || Sbjct 25197801 GGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGG 25197742 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || ||||| || | || || || ||||| ||||| || || || Sbjct 25197741 ATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAGAGTGATAGTCTTC 25197682 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 | ||| | ||| || | ||| || |||||| Sbjct 25197681 CTAGTAAGTGTCTTCACAAAGATATGCATT 25197652 >seq5 Length=158699395 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | | || | || | |||| |||||| || || |||||| Sbjct 71676930 ATGCCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCA 71676989 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | || || ||||||||||| | | ||| ||||| || Sbjct 71676990 GCTAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGG 71677049 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || ||||| || | ||||| || || Sbjct 71677050 GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAAGACTCA 71677109 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || || || | ||| |||||||| Sbjct 71677110 ACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 71677159 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | | || | || | |||| |||||| || || || ||| Sbjct 71681763 ATGCCACCTCTCAGCCTAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAGTCA 71681822 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | || || ||||||||||| | | ||| ||||| || Sbjct 71681823 GCTAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGG 71681882 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || ||||| || | ||||| || || Sbjct 71681883 GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAAGACTCA 71681942 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || || || | ||| |||||||| Sbjct 71681943 ACCTCCAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 71681992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984222820290150