Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-29 seq1 122 3e-22 seq5 107 6e-18 seq2 104 7e-17 seq3 98.7 3e-15 seq13474 84.2 6e-11 >seq4 Length=191835039 Score = 145 bits (160), Expect = 2e-29 Identities = 239/341 (70%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||||| || |||||| | ||| |||||||||||| || | | | ||| Sbjct 61403233 TTTCTTACAGTACCATCATATTTTACCATTATGTCTTCCATAGCTTTCACAAGTCTCCGC 61403292 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| |||||| ||| || || |||||||||||||| ||||| | | ||||||| Sbjct 61403293 TGAATATACCCAGTTTCAGAAGTCTTGACAGCTGTATCAATAAGACCTTCTCTACCACCC 61403352 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||| || || | |||| ||| || || | || | ||| |||| |||||| Sbjct 61403353 ATAGCATGAAAAAAGAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAA 61403412 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCAT 302776 ||||| || || || ||| || || || ||||||| || | | || | | Sbjct 61403413 CCACGACTTTCAGGACCATAGTCATCTTTTGTGAAATGTGGCAATGTTC-GATCGATGA- 61403470 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||| || |||||||| ||||| ||||||||||| | || | | |||| || | Sbjct 61403471 AACCAAATGGTATCCGCTTTCCTTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGTG 61403530 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||| || | ||| || || ||||| ||| | |||||| Sbjct 61403531 AAATGTTAATGAAACTACCTTTTGAGCCTGCAGTGACCATA 61403571 >seq1 Length=275477322 Score = 122 bits (134), Expect = 3e-22 Identities = 217/314 (69%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| |||||| || | | | || || ||||| ||||| ||| || || Sbjct 58602018 CATGATGTCCTCCATAGCTTTCACAAGCCTGCGTTGGATATACCCAGTCTCAGAAGTCTT 58601959 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | ||||||||||||||| ||||| | |||| ||| Sbjct 58601958 CACAGCCGTATCAATCAGACCTTCTCTACCACCCATAGCATGAAAGAAAAATTCTTGCGG 58601899 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || |||| || | ||| | || || || ||||| || || || ||| Sbjct 58601898 TGTCAGGCCCCGAAGGTAAGAGTTTTCCACAAATCCACGACTTTCAGGACCATAGTCATC 58601839 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTG-TTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 || || || ||||||| || | | || | | || ||||||| |||||||| |||| Sbjct 58601838 TTTCGTGAAATGTGGCAATGTTCGGCCACTGA-AACCAAATGGGATCCGCTTTCCCTCAA 58601780 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | ||||||||||| | || | | ||| || ||||| || | |||||| || |||| Sbjct 58601779 CATTCTGCTGTCCAACACAAGCAGCCATTTGAGAAATGTTAATGAAACTGCCTTTTGAGC 58601720 Query 302864 CAGCATTTACCATA 302877 | ||| | |||||| Sbjct 58601719 CTGCAGTGACCATA 58601706 >seq5 Length=158699395 Score = 107 bits (118), Expect = 6e-18 Identities = 341/513 (66%), Gaps = 22/513 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | || || || || |||||||| || || Sbjct 71162734 CTGTCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCA 71162793 Query 288910 GCCAATACAACAATAGATTCG---GTTTGCTTA-AATCCATCCATACTTGTTAAAATTTG 288965 || |||| |||||| |||| |||| | | || |||||||| || || | ||| Sbjct 71162794 GC-AATA--ACAATA-ATTCCAGTGTTTCCCTCGAAACCATCCATCTCAGTCAACAGTTG 71162849 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 || || || || ||||||||||||||| ||| | ||| ||| | | | || || Sbjct 71162850 GTTGAGAGTCTGCTCCCTTTCATCATTTCCACCACC--AAT-ACCTGTACCTCT---TTG 71162903 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||| |||||||||||||| |||| || | | || |||| ||| | | || | Sbjct 71162904 CCTACCGACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTT 71162963 Query 289086 --TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || ||| | || | || | ||| || |||| ||||||| |||| || ||||| || Sbjct 71162964 CTTGAAAAGA--TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCG 71163021 Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | || | |||| | |||| ||| || || || || | |||| | || || | Sbjct 71163022 GAGCCTGAAA-TTGAGAAAAATGGCACACCAGCCTCTCCCGCAATTGCCTTGGCAAGCAA 71163080 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 || ||||| ||||||||||| || | | ||||| || || || | || ||| | Sbjct 71163081 AGTTTTACCAGTTCCAGGTGGACCAACAAGAAGAACACCTTTAGGAATGCGAGCACCAAC 71163140 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTG 289321 || | | | ||||| |||| || || || || | |||| | ||| || | |||| Sbjct 71163141 AGCAGTGAACCTTTCAGGCTTCTTCAAGAACTCGACCACTTCCATGAAG-TCTTGCTTTG 71163199 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 | |||||| || || |||||| |||| |||| Sbjct 71163200 CTTCATCAACACCAGCAACATCATCAAATGTAA 71163232 >seq2 Length=243061704 Score = 104 bits (114), Expect = 7e-17 Identities = 204/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| || | ||||||||||| ||||| |||||| |||| | ||| Sbjct 27518029 GCAATGAGACCACATTTCTCGCACACATGGACTCTGTATGCATCACTCTGGTCAAACAGC 27518088 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| |||| || ||| || || | |||||||||||| | |||||||| || Sbjct 27518089 CTTTCCTTCAGGAAGAAAGCTGCTCCATGGGCAATCATACAATCCCTTTCCATTTCTCCA 27518148 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || |||||||| || || | | |||||| || || || || ||||| | | | Sbjct 27518149 AAGCGGAGACCACCGTCACGTGAACGACCCTCTGCTGGTTGTCGGGTGAGTATCTGAACA 27518208 Query 251584 GGACCGATGGAGCGGCT---ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | | | || |||| ||| || | ||||| |||||||| | ||||| Sbjct 27518209 GGACC-ACG--ACCTCTAGAATGTATCTTGTCGTCCACCATGTGCTTGAGTCTTTGGTAA 27518265 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 ||| |||||| | || || | | | || || | |||||| || | || ||||| Sbjct 27518266 TATGTGGGACCCAGAAAAATCATAGCTGTCAGTTTCCTTCCAGTGTGACCATTGTACAT 27518324 >seq3 Length=300915289 Score = 98.7 bits (108), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| || || || | |||||| |||| || Sbjct 561867 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCGGTATCATTGAAAACACGTA 561808 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| || ||||| ||||| ||||| ||||| ||||| | |||| | | Sbjct 561807 GCATAGGAACGATTCCATTAGAAGTTCCATTTGTTCCTCGAATGTAGCTCCCAGTAGCAC 561748 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || ||||| | || || || || | ||||| || ||||||||| Sbjct 561747 GAATGTTGTGAATTGAGACACCGATTCCTCCAGCACATTTGCTTATCGCGGCGCATTCCG 561688 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 561687 AGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 561648 >seq13474 Length=172843 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 84932 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 84873 Query 409011 TAGAACAtttttttAA 409026 || |||||| |||| Sbjct 84872 GGGACCATTTTGTTAA 84857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471433111109093