Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq4 91.5 1e-13 seq5 89.7 4e-13 seq2 84.2 2e-11 >seq7 Length=154015841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || ||||| || || | || ||||| ||||||||| | || |||| ||| | Sbjct 60356398 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTGGAGTCCTCA 60356339 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || ||||||| ||||| || ||| | ||| ||| || Sbjct 60356338 -GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 60356280 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| || || ||||||||||||| | | || ||||||| ||||| Sbjct 60356279 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAA 60356220 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || || || ||||| | ||| ||||| Sbjct 60356219 CATCCAGAAGGAGTCTACCCTCCACCTGGTG 60356189 >seq4 Length=191835039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| || | |||||||| ||||| || | || |||| || Sbjct 68254688 AATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTGGAGTCTTC 68254747 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || ||||||| ||||| || ||| | ||| ||| || Sbjct 68254748 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 68254807 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| || || ||||||||||||| | || |||| |||||||| Sbjct 68254808 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGGACCCTGGCAGATTACAA 68254867 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || ||||| || Sbjct 68254868 CATTCAGAAGGAATCCAC 68254885 >seq5 Length=158699395 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || || ||||| || | || ||| || Sbjct 71677159 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACGCTGGAGGTTGAGTCTTCA 71677100 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| ||||| || ||| | ||| ||||| Sbjct 71677099 GACACAATCGACAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 71677040 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | | || | || ||||||||| Sbjct 71677039 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCTTAGCTGATTACAAC 71676980 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||| | ||| | ||| | || ||| |||| || Sbjct 71676979 ATTCAGAAAGAGTCTACCCTTCACCTTGTGCTTAGGCTGAGAGGTGG 71676933 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || || ||||| || | || ||| || Sbjct 71681992 ATGCAGATTTTTGTGAAGACCTTGACTGGAAAGACCATCACGCTGGAGGTTGAGTCTTCA 71681933 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| ||||| || ||| | ||| ||||| Sbjct 71681932 GACACAATCGACAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 71681873 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | | || | || || |||||| Sbjct 71681872 CAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCTTAGCTGACTACAAC 71681813 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||| | ||| | ||| | || ||| |||| || Sbjct 71681812 ATTCAGAAAGAGTCTACCCTTCACCTTGTGCTTAGGCTGAGAGGTGG 71681766 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||||||| |||| |||| | | Sbjct 81635742 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTGGAGTCCTCC 81635801 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| || || Sbjct 81635802 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 81635861 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| | | || |||| || |||||| Sbjct 81635862 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 81635921 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 81635922 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 81635951 >seq2 Length=243061704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||| ||| |||| |||| || | Sbjct 229073129 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 229073188 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || ||| ||||| ||||| || ||| | ||| ||| || Sbjct 229073189 GACACTATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 229073248 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||| | | | || | || ||||||||| Sbjct 229073249 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTGCTGATTACAAC 229073308 Query 110453 ATTCAAAAAGA 110463 || || || || Sbjct 229073309 ATCCAGAAGGA 229073319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412739012603777