Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq10612 123 6e-24 >seq10612 Length=1601 Score = 123 bits (136), Expect = 6e-24 Identities = 278/411 (68%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 18674 TTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAG 18733 || |||||||| ||||| |||||||| | ||| | || || |||||| ||| ||| Sbjct 411 TTGTAAAACATCTCGATATAATCAAACACATCCGCACGGGCCATTTCTCGTGTTTTATAG 470 Query 18734 ATCTTTTTCTTTATCCGTTCA--CGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGT 18791 ||| | || || || | ||| | || | || || ||||| ||| || || || | Sbjct 471 ATCCTCTTTTTAATTCTTTCCTTCTTTAAACTA-CTA-AAAAAGGATTCAGCAACAGCAT 528 Query 18792 TGTCATGACAGTTACCGCGACGGCTCATACT--GCCCTCCAGCCCGTGTGATTT---CAG 18846 |||| |||||| || ||||| |||||||| | || | | || ||| ||| Sbjct 529 TGTCCCAACAGTTTCCACGACGACTCATACTCGGAACTAAAT----TATGCTTTTGACAG 584 Query 18847 GAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTG 18906 || |||||| || ||| |||| || |||||| || || || | | ||| | Sbjct 585 -AATTTCTGCCAGTCTCCGCTACTGTATTGTGAGCCTTGGTCTGAGTGTATGATCACAGG 643 Query 18907 CTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGT 18966 | | || | |||||||| || ||||| | |||||||| || || |||||||| | Sbjct 644 TTCATTGGGTCTGCGTCGCCATACCGCCATTAAAAGTGCATCCAAAACGATATCCTTGGC 703 Query 18967 CATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGC 19026 | | || | ||||||||| || || ||||| | || | | || | ||||||||| Sbjct 704 AAGCGTAGGTTTCATTGACCAACCGATGACTTTCCTTGAATATAAATCGAGAACCACAGC 763 Query 19027 CAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCA 19077 |||||| | |||||||| ||| ||||||||||| || || || ||||| Sbjct 764 CAGATATAACCAGCCTTGCCAAGTACGGATGTAGGTAATATCAGTCACCCA 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127073225658960